LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso12g0219	ATGGAGGGAACCGCAACAGGGTGTTACAAGTGCGGCAGACCTGGTCACTGGTCACGGGATTGCCCTTTCTCCGCTCCCAATTCCAATCCTAACCCTAACCCTAACCCTAACCCCGCCACCACTCCCAATCCAAATACTCCAAATCCTTCTTCCTCTTCTTTCAAGCCCAGATTCGCCGCCGAAAAGCCCAAGAAACTCCCCCGAACAAAGCCCAAGCTCACACCGGAGCTTCTTCTCTCCGACGAGGGTCTCGGTTACGTCCTCCGCTACTTCCCTCGCGAGTTCAAATACCGTGGTGGTGGCCACGAGGTTCGCGATTTGGGTAACCTGCTTCGTCTGTACACCGAATGGCACTCTCGCTTGCTCCCTTATTACTCTTTCAATCAGTTTGTTCACAAAGTGGAGAAAGTTGCTGCTACAAGGCGTGTAAAGACTTGCCTTAGAGAATTGAGAGAAAGAGTTGCAAGTGGTGGAGATCCAACAAAACTGCGTGAACCACCTGTTGTGCATGACATTCCATCTGATGAGCACGGATATGTTGTATCTGCAGAAGATGGGGGAGCAACTCATCAAGAGACAGATGTGTTTGCAGAATCCGAAAATGTTAATGACATTCAAGAAGACATGCTTAATGATATATATGATAAAGCTACTGAAGAACATGCTCAGTCCATGCACAATGTTATTGGTACTAACAAGGCTTCAGAAAGTATCGCAGCTGAAAAGACATCAGAGGAAGTTCAATATAATGGATCCAGCCAGTCTGGCAAAGCTGAGATAACAGAAGAGCAGAGGGCTCGTATGGAAGCAAATAGGTTGAAGGCACTAGAAAGGCGAGCTGAGATAACAGAAGAGCAGAGAGCTCGTATGGAAGCCAATAGGTTAAAGGCACTAGAAAGGCGTGCTGCCTTATCACAAGCCTCCTAA	927	0.479	MEGTATGCYKCGRPGHWSRDCPFSAPNSNPNPNPNPNPATTPNPNTPNPSSSSFKPRFAAEKPKKLPRTKPKLTPELLLSDEGLGYVLRYFPREFKYRGGGHEVRDLGNLLRLYTEWHSRLLPYYSFNQFVHKVEKVAATRRVKTCLRELRERVASGGDPTKLREPPVVHDIPSDEHGYVVSAEDGGATHQETDVFAESENVNDIQEDMLNDIYDKATEEHAQSMHNVIGTNKASESIAAEKTSEEVQYNGSSQSGKAEITEEQRARMEANRLKALERRAEITEEQRARMEANRLKALERRAALSQAS*	309

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso12g0219	308	MobiDBLite	consensus disorder prediction	27	45	-	-
	Gso12g0219	308	MobiDBLite	consensus disorder prediction	236	259	-	-
	Gso12g0219	308	MobiDBLite	consensus disorder prediction	1	74	-	-
	Gso12g0219	308	MobiDBLite	consensus disorder prediction	236	266	-	-
	Gso12g0219	308	ProSiteProfiles	Zinc finger CCHC-type profile.	8	22	IPR001878	GO:0003676\|GO:0008270
	Gso12g0219	308	Pfam	Zinc knuckle	7	22	IPR001878	GO:0003676\|GO:0008270
	Gso12g0219	308	PANTHER	TIMELESS INTERACTING-RELATED	4	280	IPR040038	GO:0000076
	Gso12g0219	308	Coils	Coil	258	300	-	-
	Gso12g0219	308	Gene3D	-	4	48	-	-
	Gso12g0219	308	Pfam	Replication Fork Protection Component Swi3	72	153	IPR012923	GO:0005634\|GO:0006974\|GO:0048478
	Gso12g0219	308	SUPERFAMILY	Retrovirus zinc finger-like domains	6	24	IPR036875	GO:0003676\|GO:0008270
	Gso12g0219	308	SMART	c2hcfinal6	7	23	IPR001878	GO:0003676\|GO:0008270
	Gso12g0219	308	PANTHER	TIMELESS-INTERACTING PROTEIN	4	280	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso12g0219	Gso-Chr12	1857618	1867401	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso12g0219	K10904		-	gmx:100799216	530.02

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso12g0219	12	1857618	1867401	Gso11g0849	11	7599607	7602951	GST