Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso12g0216 ATGGTCCAACCGGCGCCGGCGATGACTCAGTTCCTCAACTCCGTCCTCTCCCAGCGCGGCCCCTCCGCGGTCCCTTATTCCGAGGACACCAAGTGGCTCATCCGCCAGCACCTCGTGGCGCTCACCACCGCCTTCCCTTCCCTCGAGCCCAAAACGGCGTCGTTCACCCACAACGACGGCCGTTCCGTCAACCTCCTCCAGGCCGACGGCACCATCCCGATGACGTTCCAAGGCGTCACCTACAACATCCCCGTCGTCATCTGGCTCATGGAATCCTACCCCCGCCACCCGCCCTGCGTCTACGTGAATCCCACGCGCGACATGATCATCAAGCGCCCTCACCCTCACGTTAACCCCTCTGGTTTGGTTTCCGTGCCTTATTTGCAGAATTGGACTTACCCTAGTTCCAACCTCGTCGATCTCATTCTCAATCTCAGCCTCCACTTCGGCCGCGACCCTCCTCTTTATTCCCAACGCAGACCTAACCCTAACCCCAACCCCAATCCCCATCCTCCTCCCAATTACGGAAATTCTCCCTCTAATTTATCATCTTCATCTTCATCTTCATCTGGCTATCCCCATGCCCATGCCCATGCCCACCCTCCTCCGAGGACTTACCCTCCTTCTCCTTACCCTGCTTCTTCTTCTAGGGTTCAGTCCTCTGAGGATCCTTCTGAGGTTTTCAAGCGCAACGCGATTAACAAGCTTGTGGAGATGGTTCATGGAGATGTTGCCGCGTTGAGGAAGACCCGGGAGGGTGAAATGGAGGAGCTGTTTAGTTTGCAGGGTGTGCTGAAACAACGCGAGGAGAGTCTCAACAAGGGTGTGAAGGAGATGCAGGAGGAGATGGAGGCTTTGGAGCAGCAGTTGCAGATGGTGTTGATGAATACTGATGTTTTGGAGGGGTGGTTGAGGGATAATCAGGGGAAGAAGATGGCCGGTTTGGAGAATCCCGAGGACGCTTTTGAGTGTGCGGATGTGCTCTCGAAGCAGATGCTTGACTGTACTGCTGCTGATTTGGCGATTGAGGATACGCTTTATGCGTTGGATAAGGCGCTTCAGGTGGGTGCTGTGCCATTTGATCAGTACTTGAGGAGTGTGAGGGCGCTGTCCAGGGAGCAGTTCTTTCATCGTGCCACCGCCGCGAAAGTTAGGGCTGCTCAGTTGCAGGCTCAGGTTGCCAATATGGCTGCCCGGAGTCCGCATTATGGTAGCTAA 1218 0.5567 MVQPAPAMTQFLNSVLSQRGPSAVPYSEDTKWLIRQHLVALTTAFPSLEPKTASFTHNDGRSVNLLQADGTIPMTFQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLVSVPYLQNWTYPSSNLVDLILNLSLHFGRDPPLYSQRRPNPNPNPNPHPPPNYGNSPSNLSSSSSSSSGYPHAHAHAHPPPRTYPPSPYPASSSRVQSSEDPSEVFKRNAINKLVEMVHGDVAALRKTREGEMEELFSLQGVLKQREESLNKGVKEMQEEMEALEQQLQMVLMNTDVLEGWLRDNQGKKMAGLENPEDAFECADVLSKQMLDCTAADLAIEDTLYALDKALQVGAVPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVANMAARSPHYGS* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso12g0216 405 Gene3D Ubiquitin Conjugating Enzyme 3 156 IPR016135 -
Gso12g0216 405 MobiDBLite consensus disorder prediction 211 226 - -
Gso12g0216 405 Coils Coil 269 296 - -
Gso12g0216 405 SUPERFAMILY Endosomal sorting complex assembly domain 326 386 IPR037202 -
Gso12g0216 405 Gene3D - 327 387 - -
Gso12g0216 405 ProSiteProfiles Steadiness box (SB) domain profile. 326 394 IPR017916 -
Gso12g0216 405 Pfam UEV domain 35 155 IPR008883 GO:0015031|GO:0036211
Gso12g0216 405 MobiDBLite consensus disorder prediction 154 226 - -
Gso12g0216 405 MobiDBLite consensus disorder prediction 158 176 - -
Gso12g0216 405 Pfam Vps23 core domain 320 383 IPR017916 -
Gso12g0216 405 PANTHER TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED 9 403 - -
Gso12g0216 405 MobiDBLite consensus disorder prediction 177 193 - -
Gso12g0216 405 SUPERFAMILY UBC-like 17 155 IPR016135 -
Gso12g0216 405 ProSiteProfiles UEV domain profile. 15 159 IPR008883 GO:0015031|GO:0036211
Gso12g0216 405 PANTHER PROTEIN ELC-LIKE 9 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso12g0216 Gso-Chr12 1832029 1833828 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso12g0216 K12183 - gmx:100798165 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0216 12 1832029 1833828 Gso11g0842 11 7555848 7557723 GST