Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso11g0842 | ATGGTCCAACCGGCGCCGGCGATGACTCAGTTCCTCAACTCCGTCCTCTCCCAGCGCGGCCCCTCCGCCGTCCCCTACTCCGAGGACACCAAGTGGCTGATCCGCCAGCACCTCGTGGCCCTCACCACCGCCTTCCCTTCCCTCGAGCCCAAAACGGCGTCGTTCACTCACAACGACGGCCGTTCCGTCAACCTCCTCCAGGCCGACGGCACCATCCCCATGACGTTCCAAGGCGTCACCTACAACATCCCCGTCGTCATCTGGCTCATGGAGTCCTACCCTCGCCACCCGCCCTGCGTCTACGTCAATCCCACGCGCGACATGATCATCAAGCGCCCTCATCCTCACGTTAACCCTTCTGGCTTGGTTTCCGTCCCTTACTTGCAGAATTGGACTTACCCTAGCTCCAACCTCGTCGATCTTATTCTCAATCTCAGCCTCCACTTCGGCCGCGACCCTCCTCTTTATTCCCAACGCAGACCTAACCCTAACACCAACCCCAACCCCAACCCCAACCCCAACCCCAACCCTAATCCCACTCCTCATCCCCATCCTCCTCCCAATTACGGAAACTCTTCTCCCTCTAATTTATCGTCATCTTCATCTGGATATCCCCACGCCCATGCCCACCCTCCTCCAAGGACTTACCCTCCTTCCCCTTACCCTGCTCCTTCTTCTAGGGTTCAGTCCACTGAGGATCCTTCTGAGGTTTTCAAGCGCAACGCTATTAACAAGCTTGTGGAGATGGTTCATGGCGACGTTGCCGCTTTGAGGAAGACCAGAGAAGATGAAATGGAGGGGCTGTTTAGTTTGCAGGGCGTGCTGAAACAGCGCGAGGAGAGTCTCAATAGGGGTGTGAAGGAGATGCAGCAGGAGATGGAGGCTTTGGAGCAGCAGTTACAGATGGTGTTGATGAATACTGATGTTTTGGAGGGGTGGTTGAGGGATAATCAGGGGAAGAAGATGGCCGGTTTGGAGAATCCCGAGGATGCTTTTGAGTGTGCGGATGTGCTCTCCAAGCAGATGCTTGACTGTACTGCTGCTGATTTGGCGATTGAGGACACGCTTTACGCGTTGGATAAGGCACTTCAGGTTGGAGGTGTGCCATTTGATCAGTACTTGAGGAGCGTGAGGGCCCTGTCCAGGGAGCAGTTCTTTCACCGCGCCACTGCCGCCAAAGTTAGGGCTGCTCAGCTGCAGGCTCAGGTTGCCAATATGGCTGCTCGGAGTCAGCATTATGGTTGCTGA | 1248 | 0.5609 | MVQPAPAMTQFLNSVLSQRGPSAVPYSEDTKWLIRQHLVALTTAFPSLEPKTASFTHNDGRSVNLLQADGTIPMTFQGVTYNIPVVIWLMESYPRHPPCVYVNPTRDMIIKRPHPHVNPSGLVSVPYLQNWTYPSSNLVDLILNLSLHFGRDPPLYSQRRPNPNTNPNPNPNPNPNPNPTPHPHPPPNYGNSSPSNLSSSSSGYPHAHAHPPPRTYPPSPYPAPSSRVQSTEDPSEVFKRNAINKLVEMVHGDVAALRKTREDEMEGLFSLQGVLKQREESLNRGVKEMQQEMEALEQQLQMVLMNTDVLEGWLRDNQGKKMAGLENPEDAFECADVLSKQMLDCTAADLAIEDTLYALDKALQVGGVPFDQYLRSVRALSREQFFHRATAAKVRAAQLQAQVANMAARSQHYGC* | 416 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso11g0842 | 415 | Gene3D | Ubiquitin Conjugating Enzyme | 3 | 156 | IPR016135 | - | |
| Gso11g0842 | 415 | MobiDBLite | consensus disorder prediction | 210 | 224 | - | - | |
| Gso11g0842 | 415 | MobiDBLite | consensus disorder prediction | 164 | 190 | - | - | |
| Gso11g0842 | 415 | SUPERFAMILY | Endosomal sorting complex assembly domain | 336 | 396 | IPR037202 | - | |
| Gso11g0842 | 415 | MobiDBLite | consensus disorder prediction | 191 | 205 | - | - | |
| Gso11g0842 | 415 | PANTHER | PROTEIN ELC-LIKE | 9 | 172 | - | - | |
| Gso11g0842 | 415 | PANTHER | PROTEIN ELC-LIKE | 176 | 413 | - | - | |
| Gso11g0842 | 415 | ProSiteProfiles | Steadiness box (SB) domain profile. | 336 | 404 | IPR017916 | - | |
| Gso11g0842 | 415 | Pfam | Vps23 core domain | 330 | 393 | IPR017916 | - | |
| Gso11g0842 | 415 | Coils | Coil | 279 | 306 | - | - | |
| Gso11g0842 | 415 | Gene3D | - | 337 | 397 | - | - | |
| Gso11g0842 | 415 | SUPERFAMILY | UBC-like | 17 | 155 | IPR016135 | - | |
| Gso11g0842 | 415 | Pfam | UEV domain | 35 | 155 | IPR008883 | GO:0015031|GO:0036211 | |
| Gso11g0842 | 415 | MobiDBLite | consensus disorder prediction | 153 | 235 | - | - | |
| Gso11g0842 | 415 | ProSiteProfiles | UEV domain profile. | 15 | 159 | IPR008883 | GO:0015031|GO:0036211 | |
| Gso11g0842 | 415 | PANTHER | TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED | 176 | 413 | - | - | |
| Gso11g0842 | 415 | PANTHER | TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED | 9 | 172 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso11g0842 | Gso-Chr11 | 7555848 | 7557723 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso11g0842 | K12183 | - | gmx:100778834 | 699.508 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gso12g0216 | 12 | 1832029 | 1833828 | Gso11g0842 | 11 | 7555848 | 7557723 | GST |