Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3598 ATGGCGAACAATGAGAAATGTTGTTCCACTCAACTTATTGATGGAGATGGTGCATTCAATGTTGCCGGGATTGAAAACTTCATGAAAGAGGTTAAATTAAGTGAATGTGGGCTTTCCTATGCCGTAGTTTCTATTATGGGTCCACAAAGTAGTGGCAAGAGCACGCTCTTAAATAGTTTGTTTTGCACTAACTTCACAGAGATGGATGCATTTAAGGGAAGGTCTCAAACAACCAGAGGAATTTGGATGGCTAGATGTGTTGGCATAGAGCCTTGTACACTTGTGATGGATTTGGAGGGTACTGATGGAAGAGAACGTGGAGAGGATGATACTACATTTGAAAAGCAAAGTGCTTTATTTGCTTTGGCTATCTCTGATATAGTGCTAATAAACATGTGGTGCCATGACATTGGTCGCGAACAAGCTGCAAATAAGCCGCTGTTAAAAACTGTGTTTCAGGTCATGATGAGATTGTTTAGTCCACGCAAAACAACAATGTTGTTTGTCATACGTGATAAGACAAAGACACCGCTTGAAAATTTAGAGCCTGTTTTGCGCGAAGATATTCAGAAGATATGGGACTCTGTTCCTAAACCAGATGCTCATAAAGAAACCCCATTAAGTGAATTTTTCATTGTTGAAGTTGTTGCTCTTTCTAGTTTCGAAGAAAAGGAAGAACAATTTAAGGAGCAGGTTGCCAACTTGAGGCAACGATTCTATCATTCTATCGCTCCAGGTGGGCTTGCAGGGGATCGGCGTGGAGTAGTTCCTGCTTCAGGCTTTTCTTTTAGTGCTCAAGAAATCTGGAAAATCATAAAGGAGAACAAGGATCTCGACCTTCCTGCCCACAAGGTAATGGTTGCTACTGTACGATGTGAAGAAATTGCTAACGAGAAATATGACCTTTTTGCTACAAATAAGGATTGGTGTGAGTTGGAAGAGGCTGTGCAATCTGGCCCTATTTCTGGATTTGGCAAAAAGCTCAATTCACTCATTACCACTTGTCTTTCAGAGTATGATGCTGAAGCCAACTATTTTGACGAAGGTGTGAGATCTGCAAAACAAAAGCAACTTCAAGAAAAATTGTTTCAACTTGTCCAACCAACATTCCAAATTGCGCTGGGACATATAAGGTCCGGAATTTTGGATAAGTTCAAGGAAGCATTTGACAAGGCATTGAATGGAGGGGAAGGGTTTTCATCTGCTGCCAATAAGTGCATAGAGTTTTATATGGCTCAGTTTGATGAAGGATGTGCAGATGTTGTTATTGAAATAGCAAACTGGGATACATCTAAAGGGAGGGAGAAGCTACAACGTGAAATTGATGCACATGTTGCATCCGTGCGAGCATCTAAGATGTCAGAACTTGTTTCATCATATGAGGAAAAACTAAAGGAGGCCTTGTCTGCACCTGTTGAAACTCTATTGGATGGAGCTAATAGTGATACTTGGCCATCAATAAGGAAACTTCTTAATCGTGAGACTCAATCAGCTGTTTCTGGGTTCTCTGTTGAACTTATCAGATTTGATGTGGATGAACAACAAAAAAAGAGCATGATTGTGAGTTTAGAGGATTATGCTAAGGGTGTGATAGAAGCCAAGGCTAGGGAAGAAGCTGGCAGAGTTCTAATAAGTATGAAGGACAGGTTTATGACATTGTTTAGTCATGATTCTGATTCAATGCCTCGTATTTGGACGGGAAAAGAAGATGTTCGAGCCATCACCAAGTCTGCCCGCTCTTCCTGCTTGAAGTTGTTGTCTGTAATGGCTGTAATTCGCTTGGATGATGGTGATGACATTTATGACATCGAGAAAACATTAATAGTTGCATTGGCAGATTCATCAAGCAGTTATGCTAAAGATAAGAGCACCATGGCAGTTGAACCACTAGCTTCAAGCACTTGGGATCAGGTACCACCCTCTAAAACATTGATCACACCTGTCCAATGCAAATCCTTGTGGAGGCAATTCAAGATGGAGACAGAATATAGTGTCTCTCAGGCCATTTCTGCACAGGAAGCCAACAATCGTAGCAGGCACTGGTTACCTCCACCATGGGCGATTGTGGCTTTGCTTATTCTTGGATTTAATGAATTTATGACACTTTTAAGAAATCCCTTGTATTTAGGTGTCATCTTCGTTGGCTATCTTCTCATTAAAGCCCTATGGGCGCAGCTTGACATTACGGGTGAATTTCGCCATGGAGCTCTTCCCGGAATCATCTCCTTGTCTAGCAAGTTTGTTCCAACTATCATGAACCTTATCAGAAAACTAGCAGAGGAGGGACATGGGCGCCATGCAGCTAAGGTTCCCGCTGGTAGAGTTACGTCATCTAGTGCTTCATCTAGTGTAACTTCATCGGGCAATGGAGCCGAGTATACGAGTTCATCAAAATATGAGTAG 2403 0.4174 MANNEKCCSTQLIDGDGAFNVAGIENFMKEVKLSECGLSYAVVSIMGPQSSGKSTLLNSLFCTNFTEMDAFKGRSQTTRGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTTFEKQSALFALAISDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLENLEPVLREDIQKIWDSVPKPDAHKETPLSEFFIVEVVALSSFEEKEEQFKEQVANLRQRFYHSIAPGGLAGDRRGVVPASGFSFSAQEIWKIIKENKDLDLPAHKVMVATVRCEEIANEKYDLFATNKDWCELEEAVQSGPISGFGKKLNSLITTCLSEYDAEANYFDEGVRSAKQKQLQEKLFQLVQPTFQIALGHIRSGILDKFKEAFDKALNGGEGFSSAANKCIEFYMAQFDEGCADVVIEIANWDTSKGREKLQREIDAHVASVRASKMSELVSSYEEKLKEALSAPVETLLDGANSDTWPSIRKLLNRETQSAVSGFSVELIRFDVDEQQKKSMIVSLEDYAKGVIEAKAREEAGRVLISMKDRFMTLFSHDSDSMPRIWTGKEDVRAITKSARSSCLKLLSVMAVIRLDDGDDIYDIEKTLIVALADSSSSYAKDKSTMAVEPLASSTWDQVPPSKTLITPVQCKSLWRQFKMETEYSVSQAISAQEANNRSRHWLPPPWAIVALLILGFNEFMTLLRNPLYLGVIFVGYLLIKALWAQLDITGEFRHGALPGIISLSSKFVPTIMNLIRKLAEEGHGRHAAKVPAGRVTSSSASSSVTSSGNGAEYTSSSKYE* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3598 800 MobiDBLite consensus disorder prediction 774 800 - -
Gso11g3598 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 248 IPR027417 -
Gso11g3598 800 MobiDBLite consensus disorder prediction 768 800 - -
Gso11g3598 800 Coils Coil 218 238 - -
Gso11g3598 800 Pfam Root hair defective 3 GTP-binding protein (RHD3) GTPase domain 46 281 - -
Gso11g3598 800 Hamap Protein SEY1 [SEY1]. 9 763 IPR008803 -
Gso11g3598 800 PANTHER PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 5 798 - -
Gso11g3598 800 CDD GBP 36 242 - -
Gso11g3598 800 ProSiteProfiles GB1/RHD3-type guanine nucleotide-binding (G) domain profile. 37 252 IPR030386 GO:0005525
Gso11g3598 800 PANTHER PROTEIN SEY1 5 798 IPR008803 -
Gso11g3598 800 Pfam Sey1 three-helix bundle domain 323 761 IPR046758 -
Gso11g3598 800 Gene3D - 20 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3598 Gso-Chr11 51669752 51678354 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3598 K22698 - gmx:100797516 1473.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso15g0214 15 1927860 1936460 Gso11g3598 11 51669752 51678354 GST
Gso11g3598 11 51669752 51678354 Gso7g0086 7 749294 759460 PCT
Gso11g3598 11 51669752 51678354 Gso8g1599 8 15637681 15646516 PCT
Gso7g0086 7 749294 759460 Gso11g3598 11 51669752 51678354 PCT
Gso8g1599 8 15637681 15646516 Gso11g3598 11 51669752 51678354 PCT