Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3534 ATGTTGGTGGTTTCTTTGGGGCGAATCAATGTCTCCTCGTTGTGTGCCAAAACAAGAAAATGCTTTTCCTCAAAATCTCATCTCCATACTTTCACTCCTGCTTCAGTCTTCCATCAGAAATTTCCAGAAGATCCGATGATTTGCACAAATGAATTGCCTCAAATTAGTAGTGAGGCCCCTGCACATTGGAAAATGGTTCTTCAAGGGATTCGCCAAATGCGGAGTTCTGCAGATGAACACCAACCGGTTGCACGTGAGAAAGCTGCTGATACTGTACCCCCTAAGGAAAGAAGATTTGCTGTCCTGACATCTTCCCTTTTATCAAGCCAAACTAAGGAGCATGTTACTCGTGGAGCGACACAACGTCTTGGTGAAAATGATCTGCTTACTGCTGATGCAATGGACAAAGCTGATGAAGAAACCATCAAAAAGTTAATTTACCCTGTTGGATTTTATAAAAGAAAAGCTAGTAACTTGAAGAAAATTGCCAATATTTGTCTCTTGAAGTATGATGGAGACATACCAAGCTCAATTGAGGAACTACTCTTGCTGCCAGGAGTAGGTCCTAAGATTGCTCATCTGGTTATGATTGTTGGATGGAACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGTCTTGGATGGGTTTCGAGACCAGGCTCAAAACAGAAAACTTTGACACCGGAAGAAACAAGACAAGCGCTGCAACGGTGGCTTCCGAAGGAAGAATGGGTTCCAATAAATACTCTTTTGGTAGGATTTGGACGAGCAATCTGTACTCCTCTACGGCCTCACTGTGGAGATTGTAGTGTAAATAGGTTCTGCCCATCAGCATTCAAGGAGACTTCAAGCTTGTCATCCAAGTCCAAAAGGTTTACATCGAACAAGAAGCCTTAG 915 0.4295 MLVVSLGRINVSSLCAKTRKCFSSKSHLHTFTPASVFHQKFPEDPMICTNELPQISSEAPAHWKMVLQGIRQMRSSADEHQPVAREKAADTVPPKERRFAVLTSSLLSSQTKEHVTRGATQRLGENDLLTADAMDKADEETIKKLIYPVGFYKRKASNLKKIANICLLKYDGDIPSSIEELLLLPGVGPKIAHLVMIVGWNNVQGICVDTHVHRICNRLGWVSRPGSKQKTLTPEETRQALQRWLPKEEWVPINTLLVGFGRAICTPLRPHCGDCSVNRFCPSAFKETSSLSSKSKRFTSNKKP* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3534 304 SMART ccc3 264 284 IPR003651 GO:0051539
Gso11g3534 304 CDD ENDO3c 99 261 IPR003265 GO:0006284
Gso11g3534 304 ProSitePatterns Endonuclease III family signature. 172 201 IPR004036 -
Gso11g3534 304 Pfam Helix-hairpin-helix motif 169 196 IPR000445 GO:0003677
Gso11g3534 304 Pfam HhH-GPD superfamily base excision DNA repair protein 104 245 IPR003265 GO:0006284
Gso11g3534 304 SUPERFAMILY DNA-glycosylase 92 288 IPR011257 GO:0003824|GO:0006281
Gso11g3534 304 Hamap Endonuclease III-like protein 1 [NTHL1]. 59 287 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Gso11g3534 304 Gene3D Hypothetical protein; domain 2 85 198 - -
Gso11g3534 304 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 57 298 - -
Gso11g3534 304 SMART endo3end 107 263 IPR003265 GO:0006284
Gso11g3534 304 Gene3D - 199 287 IPR023170 -
Gso11g3534 304 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 57 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3534 Gso-Chr11 51162650 51167469 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3534 K10773 - gmx:100805799 612.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3534 11 51162650 51167469 Gso11g1095 11 9791988 9796919 PCT
Gso11g1095 11 9791988 9796919 Gso11g3534 11 51162650 51167469 PCT