Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1095 ATGAATATGATGTCTGAGACAACTCGAAGCTTTTGCAAAGCCACCAGTCCCTCCAATACCACTTCCATTATTGAAGCTACCCATTCCCAAGTTCGTGTCTTTATGAGGAGAAATAAGAGACCCAGAAATATGGCCCTCAAACTTGAACAAAGCGATCATCAGGATCTCAAGGTTCCGGTTACACACAAGTTTGGCCTACCAGAGATTGAAGAATTTGCGTATTGTGGAGCAAAGGAATTGACTCAGTGTGGGAAGTCTGAAATGGGATCAGATGCGATTCCAGTGGCAAGTGAAGTTGCTTCAACAAGATCTAGTGGTGAGTCACCTGCCCAATGGGAAAAGGTGCTTGAGGGGATTCGCAAAATGAGGTGTTCTGCAGATGCACCAGTAGATACTATGGGATGCGAGAAAGCTGGGGAAACACTACCTCCTAAGGAACGAAGATTTGCTGTCCTGGTATCTTCTCTTTTATCAAGCCAAACAAAGGATCCTGTTACTCATGGAGCAATCCAACGTCTTCTTCAAAATGATCTGCTTACTGCTGATGCAATCAATGATGCTGATGAAGAAACCATCAAAAAGCTGATTTATCCTGTTGGGTTTTATACTAGAAAAGCCTCTAACTTGAAAAAAATTGCAAATATCTGTCTCATGAAGTATGATGGAGACATACCTAGCTCAATTGAGCAACTACTGTTACTTCCTGGCATCGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGGATGGAACAATGTTCAAGGAATATGTGTAGATACTCATGTCCACCGCATTTGCAACCGCCTTGGGTGGGTCTCAAGACTGGGCACAAAACAGAAAACTTCGACACCCGAAGAGACGAGGGAGGAATTGCAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAATCCTCTATTGGTAGGATTTGGACAAACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCAGCATAAGTGAGTTATGCCCCTCAGCCTTCAAGGAGACCTCAAACTCAAGCCCATCTTCTTCCAAGTCCAAAAAGTCTGGACTAAACAAGAGGGTTTGA 1074 0.4358 MNMMSETTRSFCKATSPSNTTSIIEATHSQVRVFMRRNKRPRNMALKLEQSDHQDLKVPVTHKFGLPEIEEFAYCGAKELTQCGKSEMGSDAIPVASEVASTRSSGESPAQWEKVLEGIRKMRCSADAPVDTMGCEKAGETLPPKERRFAVLVSSLLSSQTKDPVTHGAIQRLLQNDLLTADAINDADEETIKKLIYPVGFYTRKASNLKKIANICLMKYDGDIPSSIEQLLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSRLGTKQKTSTPEETREELQRWLPKEEWVPINPLLVGFGQTICTPLRPRCGECSISELCPSAFKETSNSSPSSSKSKKSGLNKRV* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1095 357 MobiDBLite consensus disorder prediction 335 357 - -
Gso11g1095 357 ProSitePatterns Endonuclease III family signature. 222 251 IPR004036 -
Gso11g1095 357 MobiDBLite consensus disorder prediction 335 350 - -
Gso11g1095 357 Pfam Helix-hairpin-helix motif 219 247 IPR000445 GO:0003677
Gso11g1095 357 Gene3D Hypothetical protein; domain 2 135 246 - -
Gso11g1095 357 PANTHER ENDONUCLEASE III HOMOLOG 2, CHLOROPLASTIC 65 351 - -
Gso11g1095 357 SMART ccc3 314 334 IPR003651 GO:0051539
Gso11g1095 357 Hamap Endonuclease III-like protein 1 [NTHL1]. 108 337 IPR030841 GO:0003906|GO:0005634|GO:0006281|GO:0006285|GO:0019104
Gso11g1095 357 Gene3D - 247 337 IPR023170 -
Gso11g1095 357 Pfam HhH-GPD superfamily base excision DNA repair protein 153 296 IPR003265 GO:0006284
Gso11g1095 357 PANTHER ENDONUCLEASE III-LIKE PROTEIN 1 65 351 - -
Gso11g1095 357 SMART endo3end 157 313 IPR003265 GO:0006284
Gso11g1095 357 SUPERFAMILY DNA-glycosylase 119 341 IPR011257 GO:0003824|GO:0006281
Gso11g1095 357 ProSitePatterns Endonuclease III iron-sulfur binding region signature. 315 331 IPR004035 -
Gso11g1095 357 CDD ENDO3c 149 311 IPR003265 GO:0006284
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1095 Gso-Chr11 9791988 9796919 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1095 K10773 - gmx:100818398 709.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1095 11 9791988 9796919 Gso11g1095 11 9791988 9796919 ECH
Gso11g3534 11 51162650 51167469 Gso11g1095 11 9791988 9796919 PCT
Gso11g1095 11 9791988 9796919 Gso11g3534 11 51162650 51167469 PCT