Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3400 ATGGGAAGCAGAATGAGCCTTTTGATGTTGTTCCTTGTTCTTTGCCATGGCGTGGCATTAACAATGGGTTTGTGGAGGACAGAGGTGGAAGAGAGAGAAGAGGGACATCCAAGGCCAGACAAATTGTTCATGATGCTGAAATCCAAGCGCGTGGCCCAAACCGACGCTGGGGAGATGCGAGTGTTGGAAAGCTATGGTGGTAGGATTTTGGAGAGGCGCTTGAACATTGGTTTCATCAACATGGAACCAAGGTCCCTCTTCATTCCTCAGTACATCGACTCCACTTTGATCATATTCCTGCGTTCAGGGGAAGCAAAGTTGGGATTCATATATAAAGACAAACTGGCGGAAAGGCATTTGAAGATGGGAGATGTATATCAAATTCCAGCTGGTTCTGCATTCTATCTAGTGAACATAGAGGAGGCTCAGAAGCTTCACATTATCTGCAGCATTGACCCCTCTGAGAGCTTGGGAATCGATATTTTCCAGTCCTTCTATCTTGGAGGAGGAGCCCATCCAGCCTCAGTACTTTCTGGATTCGAGCCTCAAATCCTTGAAACTGCTTTTAACGCATCAGGAGAAGAGTTGCGAAAAATGTTCACTAGGCAACACGAGGGTCCAATTGTGCATGTGGGGGATTCACATGCCACAAGCATATGGACCAAGTTCCTTCAACTTAAGGAGGAAGACAAACTGCAGCACCTGAGGGAGATGGTGCAACAAGAACAAGAAGAAGAGGAGGAGGAATTTGTTGCTGAAGAAGAGAAACAAACAAGTTGGTCGTGGAGGAAGCTCTTGGAATCTGTATTTGGGGATGAGATCAAGAACACAAGAGAGAAGGTTACAAAAAAATCCCCTCACTCTTGCAACCTCTATGACAGAAAGCCAGATTTCAAAAACAGTTATGGTTGGAGCGTTGCTCTAGACGGCTCTGAGTATTCTCCACTCAAAAGTTCTGGCGTTGGCATTTATCATGTCAATCTCTCAGCGGGATCAATGATGGCACCCCATGTGAATCCAAGGGCAACAGAGTATGGAATAGTGCTAAAAGGATCAGGCAGAATCCAAATAGTGTTTCCAAACGGAAGCAACGCAATGGACGCCCACATCAAAGAAGGGGACGTGTTCTTCATTCCAAGGTACTTTGCCTTCTGCCAAATAGCATCAAGGGGTGAACCACTTGAGTTCTTTGGCTTCACCACCTCGGCTCAAAAGAACAGGCCACAATTTCTGGTTGGTGCCACGTCACTCATGAGGACCATGGTGGGGCCCGAGCTTGCGGCTGCATTTGGTGTGAGCGAGGAGACCATGAATCGCGTGGCTAGGGCACAACATGAAGCTGTGATTCTACCAACTCCATGGGCTGCACATGCACATGATCACAAGGTCAAGGAGGAAGTGGTGGTGGATATTTTTCAAAAGCTTGCAAGGAATGAGATTATGGGCTTTTGA 1452 0.4697 MGSRMSLLMLFLVLCHGVALTMGLWRTEVEEREEGHPRPDKLFMMLKSKRVAQTDAGEMRVLESYGGRILERRLNIGFINMEPRSLFIPQYIDSTLIIFLRSGEAKLGFIYKDKLAERHLKMGDVYQIPAGSAFYLVNIEEAQKLHIICSIDPSESLGIDIFQSFYLGGGAHPASVLSGFEPQILETAFNASGEELRKMFTRQHEGPIVHVGDSHATSIWTKFLQLKEEDKLQHLREMVQQEQEEEEEEFVAEEEKQTSWSWRKLLESVFGDEIKNTREKVTKKSPHSCNLYDRKPDFKNSYGWSVALDGSEYSPLKSSGVGIYHVNLSAGSMMAPHVNPRATEYGIVLKGSGRIQIVFPNGSNAMDAHIKEGDVFFIPRYFAFCQIASRGEPLEFFGFTTSAQKNRPQFLVGATSLMRTMVGPELAAAFGVSEETMNRVARAQHEAVILPTPWAAHAHDHKVKEEVVVDIFQKLARNEIMGF* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3400 483 CDD cupin_7S_vicilin-like_C 296 447 - -
Gso11g3400 483 Gene3D Jelly Rolls 30 222 IPR014710 -
Gso11g3400 483 CDD cupin_7S_vicilin-like_N 51 211 - -
Gso11g3400 483 Pfam Cupin 290 437 IPR006045 -
Gso11g3400 483 Pfam Cupin 47 195 IPR006045 -
Gso11g3400 483 SUPERFAMILY RmlC-like cupins 11 447 IPR011051 -
Gso11g3400 483 Gene3D Jelly Rolls 280 453 IPR014710 -
Gso11g3400 483 PANTHER OS03G0336100 PROTEIN 1 460 - -
Gso11g3400 483 PANTHER OS03G0336100 PROTEIN-RELATED 1 460 - -
Gso11g3400 483 SMART Cupin_1_3 43 197 IPR006045 -
Gso11g3400 483 SMART Cupin_1_3 289 438 IPR006045 -
Gso11g3400 483 Coils Coil 224 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3400 Gso-Chr11 49898101 49900438 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g3400 76 463 Miscellaneous Gene Families AT2G18540 28.571 2.66e-43 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3400 - - gmx:100818796 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3400 11 49898101 49900438 Gso11g1257 11 11611222 11614632 PCT
Gso11g1257 11 11611222 11614632 Gso11g3400 11 49898101 49900438 PCT