Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1257 ATGGGAAACAAAACTACCCTTTTGCTTTTGCTCTTTGTTCTTTGCCATGGAGTGGCCACAACAACAATGGCCTTCCATGATGATGAGGGTGGTGATAAAAAGTCACCAAAAAGTTTGTTTTTGATGAGCAACTCCACGAGGGTTTTCAAGACTGATGCAGGGGAAATGCGTGTGCTGAAAAGCCATGGTGGTAGGATATTTTATAGGCACATGCACATTGGCTTCATCTCTATGGAACCAAAGTCCTTGTTTGTTCCTCAGTACCTCGACTCCAATCTCATCATATTCATCCGTAGAGGGGAAGCAAAGCTGGGATTCATATATGATGATGAACTAGCGGAAAGGAGATTGAAGACAGGGGACTTGTACATGATTCCATCTGGTTCAGCATTCTATTTGGTGAACATAGGAGAAGGTCAGAGACTTCACGTTATCTGCAGCATTGACCCCTCTACAAGCTTGGGATTAGAGACCTTCCAGTCCTTCTATATTGGGGGAGGAGCCAATTCGCACTCGGTGCTTTCTGGATTCGAACCTGCCATCCTTGAAACTGCATTTAATGAATCAAGAACGGTGGTAGAGGAAATCTTCTCCAAGGAACTAGATGGGCCAATTATGTTCGTGGATGATTCTCATGCACCTAGCTTATGGACTAAATTCCTTCAACTGAAGAAGGATGACAAAGAGCAACAGCTGAAGAAAATGATGCAAGACCAAGAGGAGGATGAGGAGGAGAAGCAAACAAGTAGGTCATGGAGGAAGCTCTTGGAAACCGTATTTGGGAAGGTGAATGAGAAGATAGAGAACAAAGACACTGCTGGTTCCCCTGCCTCTTACAACCTCTACGATGACAAAAAAGCCGATTTCAAAAACGCTTATGGTTGGAGCAAGGCACTGCATGGAGGCGAGTATCCTCCACTCAGCGAACCGGATATTGGAGTTTTACTTGTCAAACTCTCAGCGGGATCCATGTTGGCACCTCATGTGAATCCAATATCAGATGAGTATACCATAGTGCTGAGTGGTTATGGTGAACTGCATATAGGGTATCCAAACGGAAGCAAAGCAATGAAAACTAAAATCAAACAAGGGGACGTGTTTGTTGTGCCAAGATACTTCCCCTTCTGTCAAGTAGCATCAAGGGATGGACCCTTAGAGTTCTTTGGCTTCTCCACTTCTGCAAGGAAGAACAAGCCACAGTTTCTGGCTGGTGCTGCGTCCCTTCTAAGGACCTTGATGGGGCCGGAGCTTTCGGCGGCGTTCGGAGTGAGCGAGGACACGTTGCGGCGCGCTGTTGATGCTCAGCATGAGGCTGTGATACTGCCATCAGCATGGGCTGCACCACCGGAAAATGCAGGGAAGCTGAAGATGGAAGAAGAGCCAAATGCTATTAGAAGCTTTGCCAATGATGTGGTTATGGATGTTTTTTAA 1431 0.4605 MGNKTTLLLLLFVLCHGVATTTMAFHDDEGGDKKSPKSLFLMSNSTRVFKTDAGEMRVLKSHGGRIFYRHMHIGFISMEPKSLFVPQYLDSNLIIFIRRGEAKLGFIYDDELAERRLKTGDLYMIPSGSAFYLVNIGEGQRLHVICSIDPSTSLGLETFQSFYIGGGANSHSVLSGFEPAILETAFNESRTVVEEIFSKELDGPIMFVDDSHAPSLWTKFLQLKKDDKEQQLKKMMQDQEEDEEEKQTSRSWRKLLETVFGKVNEKIENKDTAGSPASYNLYDDKKADFKNAYGWSKALHGGEYPPLSEPDIGVLLVKLSAGSMLAPHVNPISDEYTIVLSGYGELHIGYPNGSKAMKTKIKQGDVFVVPRYFPFCQVASRDGPLEFFGFSTSARKNKPQFLAGAASLLRTLMGPELSAAFGVSEDTLRRAVDAQHEAVILPSAWAAPPENAGKLKMEEEPNAIRSFANDVVMDVF* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1257 476 Pfam Cupin 280 426 IPR006045 -
Gso11g1257 476 Pfam Cupin 45 146 IPR006045 -
Gso11g1257 476 PANTHER OS03G0336100 PROTEIN 1 451 - -
Gso11g1257 476 CDD cupin_7S_vicilin-like_N 48 216 - -
Gso11g1257 476 Gene3D Jelly Rolls 32 250 IPR014710 -
Gso11g1257 476 Gene3D Jelly Rolls 267 444 IPR014710 -
Gso11g1257 476 PANTHER OS03G0336100 PROTEIN-RELATED 1 451 - -
Gso11g1257 476 SUPERFAMILY RmlC-like cupins 8 438 IPR011051 -
Gso11g1257 476 SMART Cupin_1_3 279 429 IPR006045 -
Gso11g1257 476 SMART Cupin_1_3 40 194 IPR006045 -
Gso11g1257 476 Coils Coil 218 245 - -
Gso11g1257 476 CDD cupin_7S_vicilin-like_C 288 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1257 Gso-Chr11 11611222 11614632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1257 72 450 Miscellaneous Gene Families AT2G18540 29.750 1.64e-38 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1257 - - gmx:547942 917.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1257 11 11611222 11614632 Gso11g1257 11 11611222 11614632 ECH
Gso11g3400 11 49898101 49900438 Gso11g1257 11 11611222 11614632 PCT
Gso11g1257 11 11611222 11614632 Gso11g3400 11 49898101 49900438 PCT