Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g3196 ATGTCTTTAAATGCAATGGCATTTACAAAACTTAGAGTTTCATCGTTTACAAGCTCACTTGCTAGTAACAATTCAAGGCCATCCATTTATCAACCATGGAACTTATCGTTGCAATCATCAAAAATAGGAATGGTGCCAAATAAATTATCCATCAAGTCCGTTGCTTTTAGTGACAAGGTGCCTAGTCAAACTTATCTTGGTACGAAAGATTTGGATCAAGTTATAAGAAAAGGCCAAGAGGCATTGTTAAACTCAAGTGATCCATTGAGAACATTGAAGATAATTGACACCATCCAAAAGTTAGGAATTGAGCACCATTTCGAAAAGGAAATCAACTTACAGCTTGGAAGGGTAGGGGATTGGGACACTGCCGAAGACCTTTTTGCCACAGCTCTTCAATTCCGCTTGCTGAGGCATAATGGTTGGCCTACATGTTCTGATGTTTTCAACAAATTTTTGGACAAGAGTGGGAATTTCAAGGAATCTGTCACCAGAGACATTTGGGGCATGTTAAGTTTGTATGAGGCATCATATTTAGGTGCAAAAGGCGAAGAAGTACTACAACAAGCAATGGACTACTCAAGGGCTCATCTGTGTCAATCACTCCCACACCTAAGCCCTAAAGTAAGAAGTATAGTCGCTGAAGCCTTAAAGCTTCCAAGGCACCAAAGAATGGTTGGGTTGGAAGCCAAAAACTACATGGTAGAATATAGCCAAGCAAGCAACCAAATACCAGCTCTTCTAAAATTGGCAAGGCTAGACTATGACATGATTCAATCGATGCACCAAAAAGAATTAGCAGAGATCTCGAGGTGGTGGAAAGACTTGGGACTTATTGAAAGACTTGGTTTTGGAAGAGATGGACCAAGAGAGTGTTTCTTATGGGCATTGGGGATTTTTCCAGAACCTCGTCATTCAAGTTGCCGCATTGAACTTGCAAAAGCCATCTGCGTTTTACAAGTTATAGATGATGTGTTCGACACTTACGGAACATTAGATGAACTTGTTCTTTTTACTAAGGCAATCAAAAGGTGGGATCTTGATGCGATGGAGCAACTACCTGAATATATGAAAATATGTTATATGGCATTGTACAACACCACCCATGAAATTGCATACAAAATTCAGAAAGACCACAGCCTAACTGTAGTTGCTTGTTTGAAAATAACATGGATAGACTTAATTGAAGCTTATCTTAAAGAAGCCAACTGGTTCAACAACAAACATGTGCCAACTTTTCAGCAATATTTGGATAGGGGTGATTTCTTCAGGATCACCTGGCCTTGGTGCATGCAACTTTCCTCATTGGGGATGACCTCTCAAAAGAAACCATTTTCATGA 1341 0.3982 MSLNAMAFTKLRVSSFTSSLASNNSRPSIYQPWNLSLQSSKIGMVPNKLSIKSVAFSDKVPSQTYLGTKDLDQVIRKGQEALLNSSDPLRTLKIIDTIQKLGIEHHFEKEINLQLGRVGDWDTAEDLFATALQFRLLRHNGWPTCSDVFNKFLDKSGNFKESVTRDIWGMLSLYEASYLGAKGEEVLQQAMDYSRAHLCQSLPHLSPKVRSIVAEALKLPRHQRMVGLEAKNYMVEYSQASNQIPALLKLARLDYDMIQSMHQKELAEISRWWKDLGLIERLGFGRDGPRECFLWALGIFPEPRHSSCRIELAKAICVLQVIDDVFDTYGTLDELVLFTKAIKRWDLDAMEQLPEYMKICYMALYNTTHEIAYKIQKDHSLTVVACLKITWIDLIEAYLKEANWFNNKHVPTFQQYLDRGDFFRITWPWCMQLSSLGMTSQKKPFS* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g3196 446 PANTHER OS04G0344100 PROTEIN-RELATED 35 420 - -
Gso11g3196 446 Gene3D Farnesyl Diphosphate Synthase 258 444 IPR008949 -
Gso11g3196 446 Pfam Terpene synthase, N-terminal domain 69 216 IPR001906 GO:0010333|GO:0016829
Gso11g3196 446 SFLD Terpene Cyclase Like 1 C Terminal Domain 246 441 IPR034741 -
Gso11g3196 446 PANTHER GERANYL DIPHOSPHATE DIPHOSPHATASE-RELATED 35 420 - -
Gso11g3196 446 SUPERFAMILY Terpenoid synthases 245 438 IPR008949 -
Gso11g3196 446 SFLD Isoprenoid Synthase Type I 246 441 - -
Gso11g3196 446 Gene3D - 69 257 IPR036965 GO:0010333|GO:0016829
Gso11g3196 446 Pfam Terpene synthase family, metal binding domain 248 438 IPR005630 GO:0000287|GO:0010333|GO:0016829
Gso11g3196 446 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 74 241 IPR008930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g3196 Gso-Chr11 47756254 47760847 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g3196 - - gmx:100820029 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g3196 11 47756254 47760847 Gso12g0837 12 9058537 9066093 PCT