Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1516 ATGGAGCAGAGCATTGGTGGACAATCTAGCATACAATGCATATTTCTACGCAAGGACTGCTTCTCCTCAAAGCTCGCGTCTCTTCCAACTTCTCCTTCCGAGATGCCCTTTGGTCACAACCGTTGGTTTCGCAGGTTGTCGGTTTTTCCACGTTTGCAACTATGTCAAGGGCTGAGAAAGGGTTTCTCCAAAAACATGGCTTGCAGTGTCAGTGTGGATAATTGTGATACGGTTCATCCAGCAACAGATGCTTATGCTGGAGAGGCAGTTGAAGCTTTGAAAGCTGGGAAAGTCATTGCAGTACCAACTGATACACTCTATGGATTTGCTTGTGATGCTTGCTCAATGGAAGCAGTTAACAGAATTTATGAGATTAAAGGCCGTAGACATACAAGCCCAGTGGCTATTTGTGTCGGTGACGTATCAGATATAGCCCGTTTTGCTGTCACTGATCATTTACCTCATGGTCTGCTTGATTCCCTCCTACCTGGGCCTGTTACAGTTGTTCTAAATCGAGGGGATTCAAGTATTCTTGAACGATCTTTGAACCCAGGATTTGATAGTATAGGAGTTAGAGTGCCTGATTGCAATTTCATCAGGATCATTGCCCGTGGTTCAGGAACTGCCCTAGCCCTTACCAGTGCAAACCTAAGTGGCCAGCCAAGTAGTCTTTCCATCAAAGATTTTGAGAACCTCTGGGAACACTGTGCTTTTGTTTATGATGGTGGTTTGATTCCATCAAGTCGTGCAGGTTCAACAATTGTGGACCTCACCACACCACACAAATACAGAATACTTAGACCTGGAAGTGCAAAGGAAGAGACAGTTGCCATCTTGGAGAAGCATTCTTTCGTTGAGGCAGAGACCACGTAA 873 0.4525 MEQSIGGQSSIQCIFLRKDCFSSKLASLPTSPSEMPFGHNRWFRRLSVFPRLQLCQGLRKGFSKNMACSVSVDNCDTVHPATDAYAGEAVEALKAGKVIAVPTDTLYGFACDACSMEAVNRIYEIKGRRHTSPVAICVGDVSDIARFAVTDHLPHGLLDSLLPGPVTVVLNRGDSSILERSLNPGFDSIGVRVPDCNFIRIIARGSGTALALTSANLSGQPSSLSIKDFENLWEHCAFVYDGGLIPSSRAGSTIVDLTTPHKYRILRPGSAKEETVAILEKHSFVEAETT* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1516 290 PANTHER YRDC DOMAIN-CONTAINING PROTEIN, MITOCHONDRIAL 49 288 - -
Gso11g1516 290 PANTHER SUA5 49 288 - -
Gso11g1516 290 SUPERFAMILY YrdC/RibB 86 275 IPR017945 -
Gso11g1516 290 Pfam Telomere recombination 91 269 IPR006070 GO:0003725
Gso11g1516 290 ProSiteProfiles YrdC-like domain profile. 83 271 IPR006070 GO:0003725
Gso11g1516 290 Gene3D DHBP synthase 73 282 - -
Gso11g1516 290 TIGRFAM TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 87 276 IPR006070 GO:0003725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1516 Gso-Chr11 17676997 17679558 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1516 K07566 - gmx:100791087 583.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1516 11 17676997 17679558 Gso11g1516 11 17676997 17679558 ECH
Gso12g0559 12 5016679 5019775 Gso11g1516 11 17676997 17679558 GST