Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1444 ATGGCACATCCTCTCTCCAGAACTTGCCATTCACTTTTAACCCCACGTATTTACTTGGTTCCTAGGAATTTGACACTTGGTGCCACACGTCAACCTCTAGAATCCCCTGAAGATACTCAAACAACTGAGGAAGAAGAAGTAGGTAGCCAAGAGCATGTGGTGATCATTCCCATTCAAGAAGTGATTCCTCAAGCACAGAAGGTTTCAACTAATTCTGACATCACCACTGAAAACAAAGCTGAGCAAGAGAATAATACTCATCAAGATGGTGGAGTCCAAAATCAAGAGGAAGAGCAAAAGGGAGTAGTGAATGAGGAAGCCAAAGAGGAGAAGAATAAGAGTAAGACCGCAAAAGAGCAAAATGGAAAGGAGAAAAAAAGAGGGAGAAAAAAGAGAAATATTGAAGGGTACCAGAGGTATGTGTATGGGGTGTTGAAGCAAGTGCACCCTGAAATGGGAATTTCTTCCAAGTGCATGACTGCTCTGAACAACTTGATGAATGACATGTTTGAGAGGCTGACTTTTGAGGTTTCTAAGCTGACGGACTACACTGGACACATGACATTGTCTTCAAGGGAGATTCAAGGAGTAGTGAGGCTGGTTCTCCCAGGAGAGCTTGAAAAGCATGCTATTGCTGAAGGGGTCAAAGCTGTTAACAACTACACATCCTATGATGCATGA 681 0.4302 MAHPLSRTCHSLLTPRIYLVPRNLTLGATRQPLESPEDTQTTEEEEVGSQEHVVIIPIQEVIPQAQKVSTNSDITTENKAEQENNTHQDGGVQNQEEEQKGVVNEEAKEEKNKSKTAKEQNGKEKKRGRKKRNIEGYQRYVYGVLKQVHPEMGISSKCMTALNNLMNDMFERLTFEVSKLTDYTGHMTLSSREIQGVVRLVLPGELEKHAIAEGVKAVNNYTSYDA* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1444 226 Coils Coil 93 113 - -
Gso11g1444 226 PRINTS Histone H2B signature 137 155 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1444 226 PRINTS Histone H2B signature 156 176 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1444 226 PRINTS Histone H2B signature 178 195 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1444 226 PRINTS Histone H2B signature 195 208 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1444 226 PRINTS Histone H2B signature 208 221 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1444 226 MobiDBLite consensus disorder prediction 76 98 - -
Gso11g1444 226 MobiDBLite consensus disorder prediction 99 123 - -
Gso11g1444 226 SUPERFAMILY Histone-fold 108 223 IPR009072 GO:0046982
Gso11g1444 226 MobiDBLite consensus disorder prediction 76 132 - -
Gso11g1444 226 Gene3D Histone, subunit A 69 224 IPR009072 GO:0046982
Gso11g1444 226 Pfam Core histone H2A/H2B/H3/H4 83 200 IPR007125 GO:0003677
Gso11g1444 226 MobiDBLite consensus disorder prediction 29 50 - -
Gso11g1444 226 PANTHER HISTONE H2B 61 225 IPR000558 GO:0000786|GO:0003677|GO:0030527
Gso11g1444 226 PANTHER HISTONE H2B.2 61 225 - -
Gso11g1444 226 SMART h2b3 127 223 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1444 Gso-Chr11 16753010 16753894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1444 K11252 - gmx:100800255 414.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1444 11 16753010 16753894 Gso11g1444 11 16753010 16753894 ECH
Gso12g0673 12 6581061 6582121 Gso11g1444 11 16753010 16753894 GST