Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1078 ATGGGGTTGGAATCGGTGGGAGATTTAGCGATTCACGTGATTCTCAGTAAGTTAGGAGCCCAAGACACTGCCAGAGTCGCGTGTGTGAGCAAAAGGTTCTGTTCTTCCGCTTCCGACGACACTCTCTGGATCAATCACTGCTTCCACGAACTCGCTCTGACACAACCCCTCGATCATCTCGGAAACCCTCTCTCTTCCTTCAAGGAATGCTATCAAGCATGGCGAGGAGCTTTTGTTATGTATCCTTGGTCTCTTGTTAAGCGTGTAAAAAGGTGCTGGGATAAAATAAAAACCTGGTTGACCAATAATTTTCCTGAAGCTGAGGCCACTCTTTGTAAAGGTGCTACTGAAGCTGACATTCAGGAGTTGGAGAATGTATTAAAGGTGAAATTGCCACTTCCTTCAAGGATCCTTTATCGTTTTCACAATGGGCAAGAAATTGCAAAAGCAGATCCAGAAACTACTACATATGGCAGTTCTTTGGGTCTAATTGGTGGCTACTCCTTCTATAGTCATTTGGTGAATGTTTATCTATTACCTATACGTCAGATAATCCTAGAAACAAAGCAAACTAGGCGTCACTTGAGCTTTTTAAGAAGATCAAAGTATGTTCTCGTGGCTGCTTCATCCACATACAGTAGAAAGTTATTTTTCCTCAACTGTACCAATGGTCAACTATATGTTGGGACCAGGGATCTACTTACTGAAGGAGACATAATCCCTTGTGTACCTCATGATCTGATTAATTTACATCAGGAATTGAATATTTCAGAGCAACAAGATGCCATGCTACTGTGGTTAGAAGAACATGGTCGCCGTTTAGAACATGGCTTTATCAAACTTCATGACAAAGGAAATGGCAAAAGCATTAATCTTTTCCCAGAAGAACCCCCTCTTTGTTCAATGGCTGTTACTAATGGTGTGAAGGTTCGTGCTTCTGCATTGGTTATCCCTGAGTTGATTGATCTTCAAGATGACCTTGAAAAGTACTTATTTGCTTATTCAATCCGCTTGTCCCTTGAACCTCAAGGGTGCACTATTAATGGAATGTCCTTCAGCTCCTGCCAGCTCCATTGGAGGCACTGGATCATCCGAGCTAATGATATTGTTATATCTGATGTCAATGGAGAAGCTGTTATAGGACAGTATCCACTTTTGCGTCCAGGTGCTCAAGAATTTGTCTATCAGAGTCGCATGCATCTACCAACACCATCAGGTTCCATTGAAGGTTCTTTTACATTTATACCCGGCAGATTGGCAGACCCAAAAGGAGATCCTTTTCTAGCTACAGTGGCTCGTTTCCCGCTCCAGCTTCCAGACTATATTTTCTGA 1332 0.4257 MGLESVGDLAIHVILSKLGAQDTARVACVSKRFCSSASDDTLWINHCFHELALTQPLDHLGNPLSSFKECYQAWRGAFVMYPWSLVKRVKRCWDKIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPSRILYRFHNGQEIAKADPETTTYGSSLGLIGGYSFYSHLVNVYLLPIRQIILETKQTRRHLSFLRRSKYVLVAASSTYSRKLFFLNCTNGQLYVGTRDLLTEGDIIPCVPHDLINLHQELNISEQQDAMLLWLEEHGRRLEHGFIKLHDKGNGKSINLFPEEPPLCSMAVTNGVKVRASALVIPELIDLQDDLEKYLFAYSIRLSLEPQGCTINGMSFSSCQLHWRHWIIRANDIVISDVNGEAVIGQYPLLRPGAQEFVYQSRMHLPTPSGSIEGSFTFIPGRLADPKGDPFLATVARFPLQLPDYIF* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1078 443 Gene3D - 7 98 - -
Gso11g1078 443 SUPERFAMILY ApaG-like 304 443 IPR036767 -
Gso11g1078 443 ProSiteProfiles ApaG domain profile. 302 443 IPR007474 -
Gso11g1078 443 SUPERFAMILY SMI1/KNR4-like 92 209 IPR037883 -
Gso11g1078 443 PANTHER F-BOX PROTEIN SKIP16 1 443 - -
Gso11g1078 443 Pfam ApaG domain 325 415 IPR007474 -
Gso11g1078 443 SUPERFAMILY F-box domain 11 72 IPR036047 GO:0005515
Gso11g1078 443 PANTHER F-BOX PROTEIN SKIP16 1 443 - -
Gso11g1078 443 Gene3D ApaG domain 300 443 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1078 Gso-Chr11 9637200 9641219 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1078 K10290 - gmx:100778108 899.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1078 11 9637200 9641219 Gso11g1078 11 9637200 9641219 ECH
Gso12g0426 12 3721682 3726008 Gso11g1078 11 9637200 9641219 GST