Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g1076 ATGGCGGTGGTGGACGATCGCTTCGCGGATTTGAACCCTAAGACGTGCGTGGTTTTAGGCGGCAGAGGATTCCTCGGAAGATCGTTGGTGCTCAGGCTGTTGAAACTCGGTAACTGGATCGTCCGAGTCGCCGATTCCGCTCAGTCTCTCCAACTCCACCACTCCGAGTCTCTCCTCGAACAAGCTCTCTCTTCTTCTCGCGCTTCTTACTTCCACGTCGACCTTCTCGATAAACGGAGCATTGTCAAAGTTCTAGAAGGTTCCTCTGTTGTCTTTTATATGGATGTTGCCGGCGTCGATGTGAATAACTTCTATACTTGCTATAAGCTTATGGTTCAAGGTGCAAAGAATGTCATTAGTGCTTGCCGGGAATGTAGAGTGAGACGCCTGATATATAACAGTTCGGCAGATGTTGTAGTTGGTGGTTTGCATGATATTCGTGATGGAGATGAGTCGTTGGCGTATCCGTGGAAAACTAACAACACGTTAAGTGACCTTAAGGCTCAAGCGGAAGCTTTGATCCTGAGTGCCAATGACATTGATGGCCTATTGACATGCTCTCTTCGTCCTAGTAATGTTTTTGGACCTGGTGACACAGAATTTGTGCCATATTTTCTCAAATTAGCAAGATATGGTTTTTCAAAGTTTATTATAGGGACTGGTGATAATCTTTCAGATTTCACCTTTTCTGAAAATGTTACTCATGCCCATATCTGTGCAGAAGAAGCCTTAAATTTCCAAACGGTTTCTGTGGCAGGAAAGACATTTTTCATCACAAATCTCGAGCCTATGAAATTCTGGGAATTTCTCTCACTTTTGTTAGAAGGTCTTGAATATCAAAGGCCATTCATCAAACTTCCTGCTAAGTTGGTGCAATATATTCTCTCAGTTTTAAAGTGGGTACATGAAAAGTTGGGATCCAGATACTTCAGTTATCCTTTATTAGTTCACTTTTTTCAGTTAGCTTCATACACCCGAACTTTCAACTGCATGGCAGCTCAGAAAGATATTGGATACTCACCAATAGTCTCCCTCGAGGAAGGAGTCACATTAACCATAGAATCATTCTCTCATTTAGCCAGAGACTCATCTTTTTCAAGATGCTGCAGTTCCACTGAACAGTCAAAAGCAGATAAGCTGCTGGGTGGTGGAAAAGTGGCTGACATTTTGTTGTGGAGAGAAGAGAAGAAATCCTTTGCATGTTTCCTTGTGCTGGTTTTGTTGTTTTACTGGTTTTTCCTTTCTGGAAGAACTTTTATATCAGCTGCTGCGAGACTTTTGCTGTTTTCCACATTACTTTTATATGGACATGGTTTTCTGCCATCAAAGTTATTTGGTTTTCATATACAAAGGATACCCACGACGTATTTTGAGATCTCTGATACAGCAGTAAAAGATTCAGTTACCACTACAGTATATCTTTGGAACAGGGGTTTTCAAAATATAAGTGGCCTGGCCCAGGGGGACGATTGGTCTGCATTCTTCAAGATTGCAGTGTTTCTTTACCTTCTGAAGTTGATCCTGTCAGAGTTGTTCACGAAAATGATAGGCATAGGTTTGGCGGTCGCATTTATGGCATTTTTTGTTTACGAGCAATATGAATCCGAAATTGATGGATTGGTGGATTTTCTGTTCACCAGTTTGAAGGAGTTCATGATACATTTGATGAGAATCTCACCTGTTTCGATATCACGGCTTCTGCATTATCAGGAGAACTTTCAGCACTAG 1728 0.419 MAVVDDRFADLNPKTCVVLGGRGFLGRSLVLRLLKLGNWIVRVADSAQSLQLHHSESLLEQALSSSRASYFHVDLLDKRSIVKVLEGSSVVFYMDVAGVDVNNFYTCYKLMVQGAKNVISACRECRVRRLIYNSSADVVVGGLHDIRDGDESLAYPWKTNNTLSDLKAQAEALILSANDIDGLLTCSLRPSNVFGPGDTEFVPYFLKLARYGFSKFIIGTGDNLSDFTFSENVTHAHICAEEALNFQTVSVAGKTFFITNLEPMKFWEFLSLLLEGLEYQRPFIKLPAKLVQYILSVLKWVHEKLGSRYFSYPLLVHFFQLASYTRTFNCMAAQKDIGYSPIVSLEEGVTLTIESFSHLARDSSFSRCCSSTEQSKADKLLGGGKVADILLWREEKKSFACFLVLVLLFYWFFLSGRTFISAAARLLLFSTLLLYGHGFLPSKLFGFHIQRIPTTYFEISDTAVKDSVTTTVYLWNRGFQNISGLAQGDDWSAFFKIAVFLYLLKLILSELFTKMIGIGLAVAFMAFFVYEQYESEIDGLVDFLFTSLKEFMIHLMRISPVSISRLLHYQENFQH* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g1076 575 Pfam Reticulon 386 542 IPR003388 -
Gso11g1076 575 Gene3D - 7 360 - -
Gso11g1076 575 ProSiteProfiles Reticulon domain profile. 386 551 IPR003388 -
Gso11g1076 575 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 12 493 - -
Gso11g1076 575 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 17 287 IPR002225 GO:0003854|GO:0006694|GO:0016616
Gso11g1076 575 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 358 IPR036291 -
Gso11g1076 575 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 3 12 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g1076 Gso-Chr11 9615978 9621716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g1076 14 363 Lipid Metabolism Gene Families AT2G33630 29.255 5.15e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g1076 K23558 - gmx:100814147 1079.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso11g1076 11 9615978 9621716 Gso11g1076 11 9615978 9621716 ECH
Gso12g0424 12 3699515 3705574 Gso11g1076 11 9615978 9621716 GST