Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso11g0904 ATGGGTCGCCTTCTTCTCTTTCTCATTATTCTCAGCCTTGTCGCATTCTCTTTCCTCTCAGACGTACAATCAGCATCGTTCAAGATTGTGAACAAGTGCCGCCACACGATATGGCCAGGATTACTCTCCGGCGCCACATCACCGCCGCTTCCCACCACTGGATTCACCCTCGAGAGCGGCAAATCAAGGATTGTAAAAATCCCGAAGTCTTGGTCGGGTCGGATATGGGCACGGACCCTCTGCGGCCAAGACTCTGACGGAAAATTCTCTTGCGCCACCGCCGACTGCGGCTCCGGCAAAGTACAGTGCGTTGGCGGGGCCAAACCTCCGGCGACATTGGCGGAATTCACTCTCAACGGTGCCGACGGGTTGGACTTCTACGACGTGAGTTTGGTCGACGGTTACAACCTTCCGATGCTGATCGTCGCCAAGGACGGAACCAGGGGCGGGTGCAGTGCCACCGGCTGCCTCGTCGACCTCAACGGCGGGTGTCCGGCGGAGCTGAGGGTGGCGCGTTCGAACGGCAGCCGCGGGAGCGTGGCGTGCCGGAGCGCGTGCGAGGCCTTCGGGGATCCTCGTTTTTGCTGCAGTGAGGCGTACTCGACGCCTGACATGTGTGGTCCTTCTCCTTATTCGTTGTTCTTCAAGCACGCTTGCCCACGCGCGTATAGCTACGCGTACGATGACAAGACCAGCACCTACACATGTGCCAATGCTAACTATTTGATTATTTTCTGCCCCTTCCCCTATACCAGCCAAAAACTGTTGGGAGTACGAAAAGATGGGGCACAGCTTCCTCTGGTAAATAAAACTATGATGTACTTATCAAGGCTACAATCAGGTGGTTCTTCACCATCAGGGTAG 864 0.5602 MGRLLLFLIILSLVAFSFLSDVQSASFKIVNKCRHTIWPGLLSGATSPPLPTTGFTLESGKSRIVKIPKSWSGRIWARTLCGQDSDGKFSCATADCGSGKVQCVGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNLPMLIVAKDGTRGGCSATGCLVDLNGGCPAELRVARSNGSRGSVACRSACEAFGDPRFCCSEAYSTPDMCGPSPYSLFFKHACPRAYSYAYDDKTSTYTCANANYLIIFCPFPYTSQKLLGVRKDGAQLPLVNKTMMYLSRLQSGGSSPSG* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso11g0904 287 CDD TLP-PA 26 246 - -
Gso11g0904 287 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 6 258 - -
Gso11g0904 287 Pfam Thaumatin family 31 247 IPR001938 -
Gso11g0904 287 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Gso11g0904 287 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Gso11g0904 287 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Gso11g0904 287 PRINTS Pathogenesis-related protein signature 87 116 IPR001938 -
Gso11g0904 287 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Gso11g0904 287 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Gso11g0904 287 SMART tha2 27 247 IPR001938 -
Gso11g0904 287 Gene3D Thaumatin 25 247 IPR037176 -
Gso11g0904 287 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Gso11g0904 287 SUPERFAMILY Osmotin, thaumatin-like protein 26 247 IPR037176 -
Gso11g0904 287 PIRSF PR5 1 279 IPR001938 -
Gso11g0904 287 PANTHER OS03G0233200 PROTEIN 6 258 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso11g0904 Gso-Chr11 8112821 8115863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso11g0904 5 247 Receptor kinase-like Gene Family AT5G38280 51.626 1.79e-86 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso11g0904 - - gmx:100777960 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso12g0263 12 2341796 2345222 Gso11g0904 11 8112821 8115863 GST