Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso10g0556 ATGGCGTCGAGGCAACAAAAAGAGGATCGAGCTGAGGCAGCTGCGAAAGTTGCTGCGAAAGAACTCGAACAACTCAACCGAGAAAAAGACCGTGATTTCAGTGTTGGTGTTGCAGACCAACACCAACAAGAAGAACATCAGTTAGATCAACAAAAGCGTGGTGTAATCGGATCCATGTTCAAGGCGGTGCAAGACACCTACGAGAACGCCAAGGAAGCTGTCGTTGGCAAGAAAGAACCTTCGACGACGACTAACTCGTACAGTACCAGAGAGGTTATTCACGACGTTGACATTCAACCCGATGACGCGGCTGCAGCGAGGGAAGTGAGAGACAAATCAGCCTCAAAGTCACCAGGTATCTACAATTCTGCCACTGCTGACAACAAAACCGGTTCCAAGGTCGGAGAGTACGCAGATTATGGTTCTCAGAAGGCGAAAGAAACAAAAGATGCAACGAAGGAAAAAGCTGGAGAGTACACAGATTATGCTTCGCAGAAGGCGAAGGAAACGAAGGACAAGACAATGGAAAAGGCTGGAGAGTACACTGATTATGCTTCGCAGAAGGCGAAGGAAACGAAGGACAAGACAATGGAGAAGGCTGGAGAGTACACAGATTATGCTTCGCAGAAGGCGAAAGAAGCCAAGGACAAGACAATGGAGAAGGGAGGGGAATATAAAGACTATGCTGCAGAGAAGGCTAAAGAAGGAAAAGATGCTACTGTGAATAAGATGGGAGAGTATAAAGATTATACGGCGGAGAAGGCTAAAGAGGGGAAAGATACGACGTTGGGGAAGCTTGGGGAGCTGAAGGACTCTGCGGCTGATGCGGCGAAGAGGGCAGTGGGTTACTTGAGCGGCAAGACAGAGGAAACCAAAGAGAAAGTCTCGGAGACGGCAGAGGCGACGGCTAATAAGGCGGCGGAGATGAAGGAGGCCACCAGGGAGAAGGCTGCCGGGACTGCGGAGGCGGCCAAGAACAAGGCCGCAGAGGTAAAGGACAGAGCTGCAGAAACCGCGGAGGCGGCCAAGAACAAGACTGCCGAGACTGCTGAGGCAGCGAAGCAGAAAACCGCACAGGCAAAGGACAACGCCAAGGAAAATGTAAGTGGTGCAGATGAAGGAGCAAGGAGGAAAATGGAGGACCTAAGGCTTCGAGGTAAAGGGTATGGAAGTCATGAATCTGCAGGGGGGCGTGGAGATAAGGTGGTGGTGAAAGTGGAAGAGAGTCGACCAGGGGCAATTGCGGAAACACTGAAAGCAGCGGATCAGATTGCGGGACAGACCTTCAACGATGTGGGACGCTTCGATGAAGAAGAGGGTGTCGTCAATGTGGAGCGCCGCAAGAAATAA 1350 0.5111 MASRQQKEDRAEAAAKVAAKELEQLNREKDRDFSVGVADQHQQEEHQLDQQKRGVIGSMFKAVQDTYENAKEAVVGKKEPSTTTNSYSTREVIHDVDIQPDDAAAAREVRDKSASKSPGIYNSATADNKTGSKVGEYADYGSQKAKETKDATKEKAGEYTDYASQKAKETKDKTMEKAGEYTDYASQKAKETKDKTMEKAGEYTDYASQKAKEAKDKTMEKGGEYKDYAAEKAKEGKDATVNKMGEYKDYTAEKAKEGKDTTLGKLGELKDSAADAAKRAVGYLSGKTEETKEKVSETAEATANKAAEMKEATREKAAGTAEAAKNKAAEVKDRAAETAEAAKNKTAETAEAAKQKTAQAKDNAKENVSGADEGARRKMEDLRLRGKGYGSHESAGGRGDKVVVKVEESRPGAIAETLKAADQIAGQTFNDVGRFDEEEGVVNVERRKK* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso10g0556 449 PANTHER DAUER UP-REGULATED-RELATED 1 448 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 116 130 - -
Gso10g0556 449 Coils Coil 8 28 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 94 114 - -
Gso10g0556 449 Pfam Late embryogenesis abundant protein 204 247 IPR004238 -
Gso10g0556 449 Pfam Late embryogenesis abundant protein 226 269 IPR004238 -
Gso10g0556 449 Pfam Late embryogenesis abundant protein 160 203 IPR004238 -
Gso10g0556 449 Pfam Late embryogenesis abundant protein 248 289 IPR004238 -
Gso10g0556 449 Pfam Late embryogenesis abundant protein 129 159 IPR004238 -
Gso10g0556 449 Pfam Late embryogenesis abundant protein 299 342 IPR004238 -
Gso10g0556 449 MobiDBLite consensus disorder prediction 307 341 - -
Gso10g0556 449 Coils Coil 314 367 - -
Gso10g0556 449 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 1 448 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 283 380 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 285 299 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 28 51 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 358 380 - -
Gso10g0556 449 Gene3D - 157 205 - -
Gso10g0556 449 Gene3D - 206 249 - -
Gso10g0556 449 Gene3D - 250 304 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 140 180 - -
Gso10g0556 449 Coils Coil 292 312 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 78 92 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 73 180 - -
Gso10g0556 449 MobiDBLite consensus disorder prediction 28 53 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso10g0556 Gso-Chr10 6251058 6253183 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso10g0556 - - gmx:100786618 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso19g1570 19 44637386 44638479 Gso10g0556 10 6251058 6253183 PCT
Gso3g1589 3 41827798 41829177 Gso10g0556 10 6251058 6253183 PCT
Gso10g0556 10 6251058 6253183 Gso19g1570 19 44637386 44638479 PCT
Gso10g0556 10 6251058 6253183 Gso3g1589 3 41827798 41829177 PCT