Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01542 ATGTCTCAGGTAGTGGCCACTCGATCCATTCACTCCTCCCTCACGCGCCCCACCTCAGGATCTGCACACCACAGGGCCCAAACGTTGTTGAAGCCTCCAACTTTTGCTTCCAAATTGTTCGGAGCACAAAGGAACAACCCCTCCAAAGTTTGCTCCCGAAGTTGCCTCGTCAATGCGAGGAAATCTGCACCCGCTAAAGTTGTTCCCGTGTCACCCGAGGATGATTCAAAGATTGAGGAAGAGTTGCAGCACTTGCGTGGTATGCAGCAACTTGGCGACACTTCTGTTGGAATGTGGTCAAAACCCACGTTTAGGAGGAAGACAAAGGTTGTTTGCACCATTGGTCCTTCTACCAACACCAGGGAAATGATTTGGAAGCTGGCTGAGGCTGGGATGAATGTTGCCCGATTGAATATGTCTCACGGAGACCATGCTTCTCATCAGAAAATTATTGATTTGGTTAAAGAATATAATGCTCAATCCAAGGACAACGTAATTGCAATTATGCTTGATACCAAGGGTCCTGAGGTTAGGAGTGGGGATTTGCCACAACCAATCAATTTAACAACTGGGCAGGAATTCACTTTTACCATCCGGAGGGGTGTTGGAACTGCAGATTGTGTTAGTGTGAACTATGACGATTTCGTCAATGATGTGGATGTGGGAGACATGCTTCTTGTTGATGgtggtatgatgtctttggtggttaagtctaagacagaggattctgtgaaatgtgaagttgttgatggaggagagctcaagtcaaggagacatttgaatgttagaggaaaaagtgcaacactgccttccataactgagaaggattgggatgacatcaaatttggagtggataacaaagttgacttctatgctgtttcttttgttaaggatgcacaagtagttcatgaactgaagaattatttgaaaagctgtgatgctgatatacacgtcattgtaaaaattgaaagtgcagactctataccaaacttgcattcaattattacagcgtctgatggggccatggttgcaagaggagatcttggtgcagaactccctattgaagaggttccacttttgcaggaagaaataatcaccatatgtcgtagcatgggaaaggccgttattgtggcaacaaatatgctggaaagcatgattgttcacccgacaccaaccagagccgaggtatccgatattgcaattgctgttcgagaaggttctgatgcaataatgctttctggggaaactgctcatggaaagttcccactaaaagccgtgaaagtaatgcacaccgtagcattacggacagaagccactatacctggtggtcaaatgccaccaaatattggtcaagtattcaagaaccacatgagtgagatgtttgcttaccatgcaaccatgatgtctaatacccttggaacctcaactgttgtcttcactagatcaggcttcatggctATCCTTTTGAGCCACTATCGACCTTCAGGCACCATATTTGCTTTTACAGATCAAAAGAGGATACAACAGAGGTTGGCTTTGTATCAAGGAGTCTGTCCTATTTACATGGAATTCTCTGAAGATGCTGAAGAGACTTTCACAAGGGCCTTGGATTTGCTGCAGAAGCAAGGAATGGTGAAATCAGGAGAAGAAGTAGCACTAGTACAAAGTGGCACGCAACCCATATGGAGGTTCCAATCCACTCACAATATCCAGGTCCGAACAGTGTAA 1728 0.2558 MSQVVATRSIHSSLTRPTSGSAHHRAQTLLKPPTFASKLFGAQRNNPSKVCSRSCLVNARKSAPAKVVPVSPEDDSKIEEELQHLRGMQQLGDTSVGMWSKPTFRRKTKVVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKIIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPINLTTGQEFTFTIRRGVGTADCVSVNYDDFVNDVDVGDMLLVDGGMMSLVVKSKTEDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAQVVHELKNYLKSCDADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIITICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGSDAIMLSGETAHGKFPLKAVKVMHTVALRTEATIPGGQMPPNIGQVFKNHMSEMFAYHATMMSNTLGTSTVVFTRSGFMAILLSHYRPSGTIFAFTDQKRIQQRLALYQGVCPIYMEFSEDAEETFTRALDLLQKQGMVKSGEEVALVQSGTQPIWRFQSTHNIQVRTV 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01542 575 Gene3D - 448 575 IPR036918 -
Gma20g01542 575 MobiDBLite consensus disorder prediction 1 25 - -
Gma20g01542 575 PRINTS Pyruvate kinase family signature 164 180 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 PRINTS Pyruvate kinase family signature 288 302 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 PRINTS Pyruvate kinase family signature 318 344 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 PRINTS Pyruvate kinase family signature 345 369 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 PRINTS Pyruvate kinase family signature 370 394 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 PRINTS Pyruvate kinase family signature 395 413 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 PRINTS Pyruvate kinase family signature 414 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 SUPERFAMILY PK beta-barrel domain-like 175 266 IPR011037 -
Gma20g01542 575 Gene3D - 176 269 IPR015806 GO:0004743|GO:0006096
Gma20g01542 575 ProSitePatterns Pyruvate kinase active site signature. 316 328 IPR018209 GO:0004743|GO:0006096
Gma20g01542 575 TIGRFAM pyruv_kin: pyruvate kinase 106 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 97 440 IPR015813 GO:0003824
Gma20g01542 575 Pfam Pyruvate kinase, barrel domain 106 441 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 Pfam Pyruvate kinase, alpha/beta domain 463 555 IPR015795 -
Gma20g01542 575 PANTHER PYRUVATE KINASE 39 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Gma20g01542 575 Gene3D - 108 433 IPR040442 -
Gma20g01542 575 SUPERFAMILY PK C-terminal domain-like 424 575 IPR036918 -
Gma20g01542 575 PANTHER PLASTIDIAL PYRUVATE KINASE 2 39 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01542 Gma-Chr20 42451218 42456020 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01542 K00873 - gmx:100809327 1112.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02171 10 49250308 49255305 Gma20g01542 20 42451218 42456020 GST
Gma16g01515 16 35015974 35022675 Gma20g01542 20 42451218 42456020 PCT
Gma09g01192 09 32584026 32592894 Gma20g01542 20 42451218 42456020 PCT
Gma20g01542 20 42451218 42456020 Gma16g01515 16 35015974 35022675 PCT
Gma20g01542 20 42451218 42456020 Gma09g01192 09 32584026 32592894 PCT