Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01531 ATGATGCTTGGTTCTGGTCAATGCCCCAATGAGTTTACCTTGTCCAGTGCCTTAAGATCGTGTTCTGCCTTGGGAGAGTTTGAGTTTAGGGCTAAAATCCATGCCTCTGTGGATGGTGATGTTATGTCTTGGACAATAATGATCTCTTCATTGGTGGAGACTAGTAAATTGAGTGAAGCTCTGCAACTCTATGCCAAAATGATTGAAGCTGGTGTTTACCCGAATGAGTTCACATCTGTTAAACTCTTAGGCGTGTGTTCTTTTCTTGGTTTGGGGATGGGTTATGGGAAAGTACTGCACGCACAGTTGATCAGATTTGTTGTGGAAATGAATTTGGTGTTGAAGACAGCCATTGTTGATATGTATGCAAAATGTGAATGGGTGGAAGATGCTATTAAGGTCTCAAATCAGACACCTGAATACGATGTGTGCTTATGGACTACCGTAATCTCTGGATTTATTCAAAATTTGCAGGTTAGAGAGGCTGTCAATGCATTGGTTGATATGGAATTGTCTGGAATTCTACCAAATAATTTTACATATGCTAGTTTATTGAATGCTAGCTCCTCAGTTTTATCATTGGAGCTTGGGGAACAGTTTCATTCAAGGGTTATCATGGTGGGATTGGAGGATGATATTTATCTAGGAAATGCACTGGTTGATATGTACATGAAATGTTCCCACACCACAACAAATGAACATGGTTTAGTAGAAGAATCTTTTTGGCTGTTTGCTGAGATGCAAGCAGCTGAAGTGCAACCAAATTCCTTTACACTATCTACTATCCTTGGAAATCTATTATTAACAAAGAAACTCCATGGACATATCATAAAATCAAAAGCAGACATAGACATGGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGACAGATGAAGCATGGGCTGTTATTGGCATGATGAACCATAGAGATATCATCACAAACACAACTTTAGCAGCAAGATTAAACCAACAGGGAGATCACCAAATGGCATTAAAAGTCATCACTCACATGTGCAATGATGAGGTTAAGATGGATGAATTTAGCTTGGCAAGTTTTATATCAGCTGCAGCTGGCTTAGGCACTATGGAAACTGGAAAGCTACTCCATTGTTATTCTTTCAAATCAGGTTTTGGGAGATGTAACTCGGCTTCAAATAGCCTAGTTCACTTGTACAGCAAGTGTGGTAGCATGTGCAATGCATGCAGAGCTTTCAAAGATATAACTGAGCCAGATACAGTGTCATGGAATGTTTTGATCTCTGGATTGGCATCAAATGGACATATATCCGATGCCCTTTCTGCCTTTGATGACATGAGaggtggtcgcctagaggaagcTATGGGAGTTATTGAAACAATGCCTTTCAAGCCGGATTCTGTAATTTATAAAACCTTATTAAATGCTTGCAACGCACATGGAAACGTGCCACCGGAAGAAGATATGGCAAGGAGATGTATTGTTGAGCTTCATCCATGTGATCCTGCAATATACTTGCTGCTTGCAAGCTTGTATGACAATGCTGGACTCTCTGAGTTCAGTGGCAAGACTCGCAAGCTGATGAGAGAAAGAGGCTTAAGAAGAAGTCCAAGGCAGTGTTGGATGGAGGTCAAAAGTAAGATTTATCTCTTCTCTGGAAGAGAGAAGATAGGTAAGAATGAGATTAATGAAAAGCTAGAGTTTCTTATAACTGAAATAAAGAATAAAGGGTATCCATACCAAGAGAATGAAGATTAG 1749 0.3951 MMLGSGQCPNEFTLSSALRSCSALGEFEFRAKIHASVDGDVMSWTIMISSLVETSKLSEALQLYAKMIEAGVYPNEFTSVKLLGVCSFLGLGMGYGKVLHAQLIRFVVEMNLVLKTAIVDMYAKCEWVEDAIKVSNQTPEYDVCLWTTVISGFIQNLQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEDDIYLGNALVDMYMKCSHTTTNEHGLVEESFWLFAEMQAAEVQPNSFTLSTILGNLLLTKKLHGHIIKSKADIDMAVGNALVDAYAGGGMTDEAWAVIGMMNHRDIITNTTLAARLNQQGDHQMALKVITHMCNDEVKMDEFSLASFISAAAGLGTMETGKLLHCYSFKSGFGRCNSASNSLVHLYSKCGSMCNACRAFKDITEPDTVSWNVLISGLASNGHISDALSAFDDMRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNAHGNVPPEEDMARRCIVELHPCDPAIYLLLASLYDNAGLSEFSGKTRKLMRERGLRRSPRQCWMEVKSKIYLFSGREKIGKNEINEKLEFLITEIKNKGYPYQENED 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01531 582 Gene3D Tetratricopeptide repeat domain 99 193 IPR011990 GO:0005515
Gma20g01531 582 Gene3D Tetratricopeptide repeat domain 194 268 IPR011990 GO:0005515
Gma20g01531 582 Gene3D Tetratricopeptide repeat domain 269 367 IPR011990 GO:0005515
Gma20g01531 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 40 74 IPR002885 -
Gma20g01531 582 PANTHER OS03G0861900 PROTEIN 39 124 - -
Gma20g01531 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 142 176 IPR002885 -
Gma20g01531 582 PANTHER OS03G0861900 PROTEIN 1 37 - -
Gma20g01531 582 PANTHER OS03G0861900 PROTEIN 444 543 - -
Gma20g01531 582 PANTHER OS03G0861900 PROTEIN 126 442 - -
Gma20g01531 582 PANTHER OS07G0578800 PROTEIN-RELATED 39 124 IPR045215 GO:0003723|GO:0009451
Gma20g01531 582 PANTHER OS07G0578800 PROTEIN-RELATED 444 543 IPR045215 GO:0003723|GO:0009451
Gma20g01531 582 PANTHER OS07G0578800 PROTEIN-RELATED 126 442 IPR045215 GO:0003723|GO:0009451
Gma20g01531 582 PANTHER OS07G0578800 PROTEIN-RELATED 1 37 IPR045215 GO:0003723|GO:0009451
Gma20g01531 582 Gene3D Tetratricopeptide repeat domain 1 98 IPR011990 GO:0005515
Gma20g01531 582 Gene3D Tetratricopeptide repeat domain 368 568 IPR011990 GO:0005515
Gma20g01531 582 Pfam PPR repeat family 40 86 IPR002885 -
Gma20g01531 582 Pfam PPR repeat family 142 187 IPR002885 -
Gma20g01531 582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Gma20g01531 582 TIGRFAM PPR: pentatricopeptide repeat domain 43 76 IPR002885 -
Gma20g01531 582 TIGRFAM PPR: pentatricopeptide repeat domain 418 444 IPR002885 -
Gma20g01531 582 Pfam PPR repeat 414 444 IPR002885 -
Gma20g01531 582 Pfam PPR repeat 289 314 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01531 Gma-Chr20 42326742 42328839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01531 40 575 Glycoside Hydrolase AT3G49170 27.143 3.53e-66 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01531 - - gmx:100791770 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02187 10 49459987 49462632 Gma20g01531 20 42326742 42328839 GST