Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02187 ATGCTATGTAGTAAAAAAGTTTCTAACAGTTTTTCTCCATGCCGCTTCCGAGAAACTTGCTTGCAGGTTCTCTCTCTCTGCAACTCACAAACCCTGAAGGAGGGAGCATGTGTTCATAGCCCAATTATCAAAGTGGGTCTTCAACATGACTTGTATTTGAGCAACAATTTATTGTGTTTGTACGCCAAATGCTTTGGAGTTGGACAAGCACGCCATCTCTTCGATGAAATGCCTCATAGGGATGTTGTGTCGTGGACTACACTCCTTTCTGCTCACACCAGGAACAAGCATCATTTTGAAGCTCTTCAATTGTTTGACATGATGCTTGGTTCTGGTCAATGCCCCAATGAGTTCACCTTGTCCAGTGCCTTAAGATCGTGTTCTGCCTTGGGAGAGTTTGAGTTTGGGGCTAAAATTCATGCCTCTGTGGTAAAGCTTGGGTTGGAGCTGAATCATGTTCTGGGTACCACTTTGGTTGATTTGTACACCAAGTGTGATTGCACTGTGGAACCACACAAATTGCTTGCGTTTGTGAAAGATGGTGATGTTGTATCTTGGACAACGATGATCTCTTCATTGGTGGAAACTAGTAAATGGAGTGAAGCTCTACAACTCTATGTCAAAATGATTGAAGCCGGTATTTACCCGAATGAGTTCACATTTGTTAAACTCTTAGGCATGCCTTCTTTTCTTGGTTTGGGGAAGGGTTATGGGAAAGTACTGCATTCACAGTTAATCACATTTGGTGTGGAAATGAATTTGATGTTGAAGACAGCCATTATTTGTATGTATGCAAAATGTAGACGGATGGAAGATGCTATTAAGGTCTCACAACAGACACCTAAATACGATGTGTGCTTATGGACTTCCATAATCTCTGGATTTGTTCAAAATTCGCAGGTTAGAGAGGCTGTCAATGCATTGGTTGATATGGAATTGTCTGGAATTCTACCAAATAATTTTACGTATGCTAGTTTATTGAATGCTAGCTCCTCAGTTTTATCATTGGAGCTTGGGGAACAGTTTCATTCAAGGGTTATCATGGTTGGATTGGAGGGTGATATTTATGTAGGAAATGCATTGGTTGATATGTACATGAAATGCTCCCATACCACAACAAATGGTGTGAAAGCTTTTAGAGGGATAGCCTTGCCGAATGTCATCTCTTGGACTTCTTTGATTGCTGGTTTTGCAGAACATGGTTTTGAAGAAGAATCTGTTCAGTTGTTTGCTGAGATGCAAGCAGCTGGAGTGCAACCAAATTCCTTTACACTATCTACTATCCTTGGAGCTTGCAGCAAGATGAAATCTATTATTCAAACAAAGAAACTCCATGGATATATCATAAAAACACAAGTAGACATTGACATGGCTGTTGGGAATGCTCTTGTAGATGCTTATGCTGGAGGGGGGATGGCAGATGAAGCATGGTCTGTTATTGGCATGATGAACCATAGAGATATCATCACATACACAACTTTAGCAGCAAGATTAAACCAACAGGGAGATCACGAAATGGCATTAAGAGTCATCACTCACATGTGCAATGATGAGGTTAAGATGGATGAATTTAGCTTGGCAAGTTTTATATCAGCTGCAGCTGGCTTAGGCATTATGGAAACTGGAAAGCAACTCCATTGTTATTCTTTCAAATCAGGTTTCGAGAGATGTAACTCAGTCTCAAATAGCCTAGTTCACTCGTACAGCAAGTGTGGTAGCATGCGCGATGCATACAGAGTTTTCAAAGATATAACTGAGCCAGATAGAGTGTCATGGAATGGTTTGATCTCTGGATTGGCATCAAATGGACTTATATCCGATGCTCTTTCTGCCTTTGATGACATGAGaggtggtcgcctagaggaagcTATGGGAGTTATTGAAACAATGCCTTTCAAGCCAGATTCTGTAATTTATAAAACCTTATTAAACGCTTGCAACTTACATGGAAATGTGCCACTGGGAGAAGATATGGCAAGGAGATGTCTCGAGCTTGATCCATGTGACCCTGCAATATACTTGCTGCTTGCAAGCTTGTATGACAATGCTGGACTCCCTGATTTTGGTGACAAGACTCGCAAGCTGATGAGAGAAAGAGGCTTAAGAAGAAGTCCAAGGCAGTGTTGGATGGAGGTAAAAAGTAAGATTTATCTCTTCTCTGCAAGAGAGAAGATAGGTAATGATGAGATCAATGAAAAGCTAGAGTCTCTTATAACTGAAATAAAGAATAGAGGGTATCCATACCAAGAGAGTGAAGACAAGTTATACCACTCAGAGCAATTGGCCCTTGCATTTGGTGTTCTTAGCGTGCCAACTTTGGCTCCAATACGCATAAATAAAAACTCACTTATCTGCACTCACTGTCATTCTTTTATAATGCTTCTGACACAATTTGTTGATAGAGAGATAATTGTGAGGGATAGGAAACGATTCCATGTCTTTAAGGACGGCCAGTGTTCATGTAGAGGTCACTCATGA 2478 0.404 MLCSKKVSNSFSPCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCLYAKCFGVGQARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRGGRLEEAMGVIETMPFKPDSVIYKTLLNACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRRSPRQCWMEVKSKIYLFSAREKIGNDEINEKLESLITEIKNRGYPYQESEDKLYHSEQLALAFGVLSVPTLAPIRINKNSLICTHCHSFIMLLTQFVDREIIVRDRKRFHVFKDGQCSCRGHS 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02187 825 PANTHER OS03G0861900 PROTEIN 269 614 - -
Gma10g02187 825 PANTHER OS03G0861900 PROTEIN 31 168 - -
Gma10g02187 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 588 622 IPR002885 -
Gma10g02187 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 81 115 IPR002885 -
Gma10g02187 825 PANTHER OS03G0861900 PROTEIN 172 268 - -
Gma10g02187 825 PANTHER OS03G0861900 PROTEIN 616 714 - -
Gma10g02187 825 Gene3D Tetratricopeptide repeat domain 135 235 IPR011990 GO:0005515
Gma10g02187 825 PANTHER OS07G0578800 PROTEIN-RELATED 269 614 IPR045215 GO:0003723|GO:0009451
Gma10g02187 825 PANTHER OS07G0578800 PROTEIN-RELATED 172 268 IPR045215 GO:0003723|GO:0009451
Gma10g02187 825 PANTHER OS07G0578800 PROTEIN-RELATED 616 714 IPR045215 GO:0003723|GO:0009451
Gma10g02187 825 Pfam DYW family of nucleic acid deaminases 755 823 IPR032867 GO:0008270
Gma10g02187 825 TIGRFAM PPR: pentatricopeptide repeat domain 287 319 IPR002885 -
Gma10g02187 825 TIGRFAM PPR: pentatricopeptide repeat domain 184 218 IPR002885 -
Gma10g02187 825 TIGRFAM PPR: pentatricopeptide repeat domain 83 117 IPR002885 -
Gma10g02187 825 TIGRFAM PPR: pentatricopeptide repeat domain 388 421 IPR002885 -
Gma10g02187 825 TIGRFAM PPR: pentatricopeptide repeat domain 590 616 IPR002885 -
Gma10g02187 825 Pfam PPR repeat 461 486 IPR002885 -
Gma10g02187 825 Pfam PPR repeat 562 584 IPR002885 -
Gma10g02187 825 PANTHER OS07G0578800 PROTEIN-RELATED 31 168 IPR045215 GO:0003723|GO:0009451
Gma10g02187 825 Pfam PPR repeat 586 616 IPR002885 -
Gma10g02187 825 Gene3D Tetratricopeptide repeat domain 13 134 IPR011990 GO:0005515
Gma10g02187 825 Gene3D Tetratricopeptide repeat domain 541 736 IPR011990 GO:0005515
Gma10g02187 825 Gene3D Tetratricopeptide repeat domain 336 443 IPR011990 GO:0005515
Gma10g02187 825 Gene3D Tetratricopeptide repeat domain 444 540 IPR011990 GO:0005515
Gma10g02187 825 Gene3D Tetratricopeptide repeat domain 239 335 IPR011990 GO:0005515
Gma10g02187 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 182 216 IPR002885 -
Gma10g02187 825 Pfam PPR repeat family 182 225 IPR002885 -
Gma10g02187 825 Pfam PPR repeat family 385 433 IPR002885 -
Gma10g02187 825 Pfam PPR repeat family 284 329 IPR002885 -
Gma10g02187 825 Pfam PPR repeat family 80 127 IPR002885 -
Gma10g02187 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 386 420 IPR002885 -
Gma10g02187 825 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 318 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02187 Gma-Chr10 49459987 49462632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02187 101 824 Glycoside Hydrolase AT3G49170 29.383 1.08e-111 359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02187 - - gmx:100791770 1583.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02187 10 49459987 49462632 Gma10g02187 10 49459987 49462632 ECH
Gma10g02187 10 49459987 49462632 Gma20g01531 20 42326742 42328839 GST