Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01508 ATGTGGCTATTCGGCAGAAAAGGGGCTTCTGGGTTTTCATCATCATCCACTGCAGAGCAAGTCACTGAAGGAATTGATGGAACTGGTTTCACTGCCATTGTCACAGGGGCATCCAGTGGTATTGGCACTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAACAATACTCAAGGAGATTCCCTCCGCTAAAGTTGATGCCATGGAGTTAGATCTCAGTTCGATGAAGTCTGTCAGGAAATTTGCATCAGAGTTTAAGTCCTCTGGTCTTCCATTGAACATCTTAATAAACAATGCAGGAATTATGGCTTGCCCTTTCAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACTATTAAAAAAACTTCACGTGAATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCTGAGGCTCACCGATTTGCATATTCTGAAGGAATCTGTTTTGACAAAATTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTTGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATCACCACCAATCTTTTCCGGCATAACAGTGCAGTGAATGGTCTAATTAATGTGATTGGGAGACTGGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTAAAGGGAATCAGTGGCAAGTATTTTTCAGACAGTAATTTGGCAAAAACAACCGCACAGGGGACTGACTCTGATTTGGCCAAGAAACTATGGGATTTCAGCATGGATTTGACTAAGTAA 942 0.4119 MWLFGRKGASGFSSSSTAEQVTEGIDGTGFTAIVTGASSGIGTETTRVLALRGVHVIMGVRNMLAAKDVKETILKEIPSAKVDAMELDLSSMKSVRKFASEFKSSGLPLNILINNAGIMACPFSLSKDKIELQFATNHIGHFLLTNLLLDTIKKTSRESKKEGRIVNVSSEAHRFAYSEGICFDKINDESSYNNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGTITTNLFRHNSAVNGLINVIGRLVLKNVQQGAATTCYVALHPQVKGISGKYFSDSNLAKTTAQGTDSDLAKKLWDFSMDLTK 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01508 313 CDD retinol-DH_like_SDR_c_like 31 305 - -
Gma20g01508 313 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 313 - -
Gma20g01508 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Gma20g01508 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Gma20g01508 313 Pfam short chain dehydrogenase 31 178 IPR002347 -
Gma20g01508 313 Gene3D - 23 313 - -
Gma20g01508 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Gma20g01508 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Gma20g01508 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Gma20g01508 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01508 Gma-Chr20 42160573 42166122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01508 31 286 Acyl Lipid Metabolism Gene Families AT3G55290 29.964 4.49e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01508 - - gmx:100796920 614.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02213 10 49687815 49692662 Gma20g01508 20 42160573 42166122 GST
Gma20g01508 20 42160573 42166122 Gma09g01299 09 35303960 35309980 PCT