Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02213 ATGTGGCCATTCAGCAGAAAAGGGTCTTCTGGGTTTTCATCATCATCCACTGCAGAGCAAGTCACTGAAGGAATTGATGGAACTGGTCTCACTGCCATTGTCACAGGGGCATCCAGTGGTATTGGAACTGAGACTTCACGTGTTCTTGCTTTGCGCGGTGTCCATGTGATTATGGGTGTGAGAAATATGCTTGCTGCTAAAGATGTCAAAGAAAAAATACTTAAGGAGATTCCCTCCGCTAAAGTTGATGCCATGGAGTTAGATCTCGGTTCGATGGAGTCTGTCAAGAAATTTGCATCAGCGTTTAAGTCGTCTGGTCTTCCATTGAACATCTTGATAAACAATGCAGGAATTATGGCATGCCCTTTCAGTCTCTCTAAAGACAAAATTGAACTACAGTTTGCCACAAATCACATAGGTCATTTTCTCTTGACAAATCTTTTGCTGGACACTATTGAAAAAACTTCACGTGAATCAAAGAAAGAAGGAAGAATTGTTAATGTTTCCTCAGAGGCTCACCGATTTGCATATTCTGAAGGAATCCGTTTTAACAAAATTAATGATGAATCAAGTTACAACAACTGGCGTGCATATGGGCAGTCAAAGCTCGCCAACATTTTACATGCAAATGAACTTACAAGACGTCTCAAGGAAGATGGGGTGGATATTTCTGCAAATTCTCTTCATCCAGGAACAATTACCACCAATCTTTTCCGACATAACAGTGCAGTGAATGCAGGTCTAATTAATGTGATTGGGAAACTGGTGCTTAAAAATGTCCAGCAGGGAGCAGCAACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATCAGTGGCAAATATTTTTCAGACAGTAATGTGGCCAATACAACCGCACAGGGGACTGACGCTGATTTGGCCAAGAAACTATGGGATTTCAGCATGAATTTGACCAAGTAA 945 0.4159 MWPFSRKGSSGFSSSSTAEQVTEGIDGTGLTAIVTGASSGIGTETSRVLALRGVHVIMGVRNMLAAKDVKEKILKEIPSAKVDAMELDLGSMESVKKFASAFKSSGLPLNILINNAGIMACPFSLSKDKIELQFATNHIGHFLLTNLLLDTIEKTSRESKKEGRIVNVSSEAHRFAYSEGIRFNKINDESSYNNWRAYGQSKLANILHANELTRRLKEDGVDISANSLHPGTITTNLFRHNSAVNAGLINVIGKLVLKNVQQGAATTCYVALHPQVKGISGKYFSDSNVANTTAQGTDADLAKKLWDFSMNLTK 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02213 314 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Gma10g02213 314 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Gma10g02213 314 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Gma10g02213 314 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Gma10g02213 314 Pfam short chain dehydrogenase 31 177 IPR002347 -
Gma10g02213 314 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 2 314 - -
Gma10g02213 314 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Gma10g02213 314 CDD retinol-DH_like_SDR_c_like 29 306 - -
Gma10g02213 314 PANTHER RETINOL DEHYDROGENASE 2 314 - -
Gma10g02213 314 Gene3D - 22 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02213 Gma-Chr10 49687815 49692662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02213 31 183 Acyl Lipid Metabolism Gene Families AT1G62610 30.303 1.88e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02213 - - gmx:100784001 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02213 10 49687815 49692662 Gma10g02213 10 49687815 49692662 ECH
Gma10g02213 10 49687815 49692662 Gma20g01508 20 42160573 42166122 GST
Gma10g02213 10 49687815 49692662 Gma09g01299 09 35303960 35309980 PCT