Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma20g01480 | ATGGTTAAGGTAACTATAGTTGGAAGGGTAAGCGATGGATTGCCTCTAGCACAAGGACTGAGATACATGAATGAAGAGTATGGATATCTTTCATGTTACAGGCAACAAGCAGAGTTCATACTCCGAGAATTTTCAAGGGGAGCATTAACAGCTCCCAAGATGACTATTCATATTGATAATTTCTGCTTCAACTACTTGGTCGAGAACGGAGTTGTTTTCATTGTGTTGTGTGAGTCCACGTACCCAAGAAAACTGGCCTTCCATTACCTACAAGATATACAAAAGGAGTTTGAGAAGTTTGATAAAACCCTCATAGGCAAAATCACAAGGCCATACAGCTTTGTCAAATTTGATGGTATAATCGCAAACATTAGCAGACAATACATTGATACAAGAACTCAGGCCAACCTATCAAAACTTAACGCTAACCGGAAACAAGATTTAGATATTGCCACTGAAGACATTTACAAAATTTTAGAAAGGAAGAGAAATTCAGAAACAATGAGAAGATTACCGGTTACTCCTCAACCTGAATCCACAATATGGTGCTCCCCACAACTTGAGGTGATTGCATTGAAATGGACACCTATTATGATCATTGTCATTACTTCGATGGCTCTTTTATGGGCTAGCTTAGCCCTCACAGATGACTTTATTGTTTGA | 663 | 0.3876 | MVKVTIVGRVSDGLPLAQGLRYMNEEYGYLSCYRQQAEFILREFSRGALTAPKMTIHIDNFCFNYLVENGVVFIVLCESTYPRKLAFHYLQDIQKEFEKFDKTLIGKITRPYSFVKFDGIIANISRQYIDTRTQANLSKLNANRKQDLDIATEDIYKILERKRNSETMRRLPVTPQPESTIWCSPQLEVIALKWTPIMIIVITSMALLWASLALTDDFIV | 220 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma20g01480 | 220 | ProSiteProfiles | Longin domain profile. | 6 | 121 | IPR010908 | - | |
| Gma20g01480 | 220 | PANTHER | VESICLE-TRAFFICKING PROTEIN SEC22B | 1 | 219 | IPR044565 | GO:0005484|GO:0006888|GO:0006890 | |
| Gma20g01480 | 220 | SUPERFAMILY | SNARE-like | 1 | 128 | IPR011012 | - | |
| Gma20g01480 | 220 | CDD | Longin | 5 | 128 | IPR010908 | - | |
| Gma20g01480 | 220 | Gene3D | Longin domain | 1 | 159 | - | - | |
| Gma20g01480 | 220 | PANTHER | SNARE-LIKE SUPERFAMILY PROTEIN | 1 | 219 | - | - | |
| Gma20g01480 | 220 | SMART | Longin_2 | 36 | 120 | IPR010908 | - | |
| Gma20g01480 | 220 | Pfam | Regulated-SNARE-like domain | 38 | 118 | IPR010908 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma20g01480 | Gma-Chr20 | 41916935 | 41918520 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma20g01480 | K08517 | - | gmx:100781527 | 441.81 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Gma10g02240 | 10 | 49979353 | 49981174 | Gma20g01480 | 20 | 41916935 | 41918520 | GST |