LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma20g01476	ATGGGAAAGCAAAAGCAACAAGTGATTTCCCGCTTCTTCGCTCCCAAACCCAAATCCcctcctcctcctcctcctcctcctcctAAAATCTCCGCCACCGTCACTTTCTCCCCCGCCAAACGCCGCCTTACTTCCAACTTCACCACCTCTCGCAAACACCCCAAACTCTCCCCCCACACCCAAAACCCCGTTCCCCCTTCACTCCACCAACGCTTCCTCCAGAAGCTTCTCGAACCTTCCACCCCTCAaCAACACCCCGCTTCCTCTTCCAAACCCCCAACCTACACTCCCCTCGAACAGCAAGTCCTTGACCTCAAAGCCAAACACCCCGACGTCCTCCTCATGGTGGAGGTCGGTTACAAGTACCGTTTCTTCGGCCAAGACGCCGAACACGCCTCCAGAGTCTTGGGCATTTACGCACACATGGACCACAACTTCTTAACCGCTAGCATACCAACTTTTCGGCTAAATGTCCACGTCAGGAGGCTCGTCACTGCCGGCTACAAGGTCGGCGTTGTCAAGCAGACCGAGACCGCCGCCATCAAGGCTCACGGCTCCAACCGCTCCGCCCCCTTCGAGCGCGGCCTGTCCGCGCTCTACACCAAGGCCACGCTCGAGGCCGCGCCGGACTTGGGGGGAGCGGAGGATGGGTGCGGCGGAGAGAGCAATTACTTGCTCTGTGTTGTGGAGAAGAGTGTTTTGGATGAGAAGGGTGGTGTTGATGCGAGGATTGGGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTTTGGGGAATTTTGTGATGGTTTTCTGAGGAGTGCGCTTGAGGCTGTTGTTCTGAACTTGTCTCCGGCTGAGTTGCTTCTCGGTGACCCTCTTTCGAAGCAAACGGAGAAGTTATTGCTGGATTTTGCTGGACCTGCCTCAAATGTTCGTGTGGAGCGTTTTTCACGAGATTGCTTCATTGATGGGGGTGCTCTTGCTGAAGTTATGACCTTGTACGAGAACATGCACATAGACAGTCCATCAGATTCAATACAAAGCAATGATTTGACTGAGAACAGAAGTCAGAAGTTAATAATCAAGGAGGTGATGAACATGCCAGATTTGGCTGTCCAAGCTTTGGCCTTAACTATTCGTCATTTAAAGGAATTTGGTTTTGAAAGAATTCTGTGTTCGGGAGCTTCTATTAGGCCTTTCTCAAGCAATACGGAAATGACCCTCTCAGCCAATGCACTTCAACAACTGGAGGTTTTAAAAAATAACAGTGATGGATCTGAAATCGGTTCTTTGCTGCAAATTATGAATCGTACTCTTACTATATTTGGCTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTGTGTGATCAAACCTTAATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCACAGTCCATGGGATCTTGTAATAGTGTGAAGAATCTTGTACGTGTTGAGGAAGATCCTGACGTAGCAATTGTGCAACCTGAGTTAGCATACACACTTTCACTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACTAGAATTTTCCATTGCACTGCTACCCCATCTGAGTTTGTTGCAGTAATTCAAGCTATTTTGTCTGCTGGAAAACAGCTTCAACAACTTAACATAGGAGAGGGGAATAATAACACATTGCGCCCTAATCTGTTAAAAAAGTTAATTTTGACTGCTTCCTCTGACAGTGTTATTGGAAATGCTGCAAAAATGTTGTCATCTTTAAACATAGACTCTGCTGATCTAGGAGATCTAACAAAATTGATTATTGCATCTGAGGGACAATTCCCAGAGGTCATTAGAGCTCGGGAGGCTTTCAAGCTGGCAGTGGAACAACTAGATTCAATGATTGACTTCTATCGCAAACAGCTTGGAATGAAAAATTTGGAATTCATTAGTATTTCTGGAACAACCCATTTGATTGAGTTATCAACTGATGTAAAGGTTCCTTCAAACTGGGTCAAGGTAAATAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTATTGACAACATTAGACAAGTTATCATTAGCAAAAGAGGAGCTCACTGTTGCCTGCCGAGCTGCCTGGAATAACTTTCTTACGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCTTTAGATTGTCTGCATTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTTGCCCAGTGTTTGTAGATGATCATGAGCCTGTTCAGATACAGATTTCTTCTGGTAGACATCCGGTTTTGGAGACTACCTTACAAGACAATTTTGTCCCAAATGATACAAACATGCATGCAGATGGAGAGTACTGTCAGATTGTTACTGGACCCAATATGGGGGGAAAAAGTTGTTATATTCGCCAGGTGGCTCTGATTGTTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAATTGCATGTCCTGGATAGGATCTACACCCGGATGGGTGCATCTGACAGTATTCAGCTAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCGCATATACTCAATAGTTGCACAGAACATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCGACATTGCATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACTCACTATCCCAAGATTGCCAGCCTGGCAACTGAATTTCCTGGCTCTGTGGCAGCATATCACGTGTCACATCTGATCTCACATGATGCAAGTAAAAATTCCAACTTGGATCATGATGTCACTTACCTATACaagctagtacctggtgtttcagagaggagttttggatttaaggttgcccagcttgcacagTTACCATCTCATTGCATCAGTCGAGCTATTGTCATGGCTTCTAAATTAGAAGCACTAGTAAACAGTAGAATACATGGTAGATCAACAAAGGAGCTATTATTGGACACGCTGGTGATTGGTCAAGAAAAAGAACAGCTTATGGCTCAATCACTTGATCGTCCACATAAAGAGTTTGATATGGCTTACAAAGATTTCTATTTAAACTTAAAAGCTGCAACAGAAGATGATGACTGGGCAAAAAGCTTTCATCTATTGGAACATGCCAGAAGCATTGCAAAGAAATTAATTGGCAGATCAATGCAGTATGTGTAA	3213	0.4367	MGKQKQQVISRFFAPKPKSPPPPPPPPPKISATVTFSPAKRRLTSNFTTSRKHPKLSPHTQNPVPPSLHQRFLQKLLEPSTPQQHPASSSKPPTYTPLEQQVLDLKAKHPDVLLMVEVGYKYRFFGQDAEHASRVLGIYAHMDHNFLTASIPTFRLNVHVRRLVTAGYKVGVVKQTETAAIKAHGSNRSAPFERGLSALYTKATLEAAPDLGGAEDGCGGESNYLLCVVEKSVLDEKGGVDARIGIVAVEISTGDVVFGEFCDGFLRSALEAVVLNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVERFSRDCFIDGGALAEVMTLYENMHIDSPSDSIQSNDLTENRSQKLIIKEVMNMPDLAVQALALTIRHLKEFGFERILCSGASIRPFSSNTEMTLSANALQQLEVLKNNSDGSEIGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTLISARLHAVSEIAQSMGSCNSVKNLVRVEEDPDVAIVQPELAYTLSLVLTTLGRAPDIQRGITRIFHCTATPSEFVAVIQAILSAGKQLQQLNIGEGNNNTLRPNLLKKLILTASSDSVIGNAAKMLSSLNIDSADLGDLTKLIIASEGQFPEVIRAREAFKLAVEQLDSMIDFYRKQLGMKNLEFISISGTTHLIELSTDVKVPSNWVKVNSTKKTIRYHPPEVLTTLDKLSLAKEELTVACRAAWNNFLTDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVCPVFVDDHEPVQIQISSGRHPVLETTLQDNFVPNDTNMHADGEYCQIVTGPNMGGKSCYIRQVALIVIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQLGRSTFLEELSETSHILNSCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLATEFPGSVAAYHVSHLISHDASKNSNLDHDVTYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSTKELLLDTLVIGQEKEQLMAQSLDRPHKEFDMAYKDFYLNLKAATEDDDWAKSFHLLEHARSIAKKLIGRSMQYV	1070

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gma20g01476	1070	MobiDBLite	consensus disorder prediction	1	67	-	-
Gma20g01476	1070	SUPERFAMILY	DNA repair protein MutS, domain II	220	292	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	Gene3D	-	403	732	-	-
Gma20g01476	1070	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	76	1061	-	-
Gma20g01476	1070	Gene3D	-	740	1017	IPR027417	-
Gma20g01476	1070	Pfam	MutS domain I	96	206	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	865	881	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	76	1061	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Gma20g01476	1070	SMART	mutATP5	784	981	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	Pfam	MutS domain V	787	984	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	MobiDBLite	consensus disorder prediction	37	67	-	-
Gma20g01476	1070	SUPERFAMILY	DNA repair protein MutS, domain I	89	204	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	SMART	DNAend	421	767	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	740	984	IPR027417	-
Gma20g01476	1070	SUPERFAMILY	DNA repair protein MutS, domain III	405	737	IPR036187	-
Gma20g01476	1070	Pfam	MutS domain II	223	293	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	Gene3D	-	582	708	-	-
Gma20g01476	1070	MobiDBLite	consensus disorder prediction	15	32	-	-
Gma20g01476	1070	Pfam	MutS domain III	406	732	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	PIRSF	Msh6	85	1038	IPR017261	GO:0006298\|GO:0030983
Gma20g01476	1070	Gene3D	MutS, connector domain	219	400	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Gma20g01476	1070	Gene3D	DNA repair protein MutS, domain I	85	211	IPR016151	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma20g01476	Gma-Chr20	41887767	41896230	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma20g01476	K08736		-	gmx:100789883	2063.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma10g02243	10	49993379	49996899	Gma20g01476	20	41887767	41896230	GST