LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma10g02243	ATGTTCAAACCAACTCAAAGTGAACAATATCTCATCAGCAGTGATCCTAACCATGCAGCAGACTTCAGCACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTGACAGCATTAGACAAGTTATCATTAGCAGAAGAGGAGCTCACTGTTGCCTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCTGCCTTAGATTGTCTGCATTCATTTGCCATTCTTTCAAGAAATAAGGGTTATGTTCGCCCAGTGTTTGTAGATGATCATGAGCCTGTTCAAATACAAATTTGTTCTGAACCTGAATACTCTACCCTCAAAATTTTTGGGGTTGCTATACTTTTGAGTTTTGACTTTGACTCATTTGATTCAAGTTCCTCATTGTTGATTGATGGAGAGTACTGTCAGATTGTTACTGGACCCGATATGGGGGGAAAAAGTTGCTACATTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTTCATGTCCTGGATAGAATCTACACCCGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAATTAAGTGAGACTTCACATATACTCCATAGCTGCACAGAACATTCACTGGTTATCATAGATGAGCTTGGGAGAGGTACAAGTACACATGATGGTATGGCCATTGCTCATGCGACGTTGTATTATCTTCTGAAGCAAAAAAGAAGCATGGTCCTCTTTGTCACACACTATCCCAAGATTGCCACGTATCACGTGTCACATCTGACCTCACACGATGCAAGTAAAAATTCCAACTTGGATCATGATATCACTTATCTATACAAGCTAGTACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTACCATCACATTGCATAAGTCGAGCTATTGTCATGGCTTCTAAATTAGAAGCACTGGTAAACAGTAGAATACATGGTAGATCAAGAAAGGAGCTGTTATTGGACACGCTGGTGATTGATCAAGAAAAAGAACAGCTTATGGCTCAACCGCATGATCATCCACATAAAGAGTTTGGTATAGCTTACAAAGATTTCTATTTAAACTTAAAAGCTGCAACACAAGATGACGATGGTGCTAAAAGCTTTCACCTATTGGAACATGCTAGAAGCATTGCAAAGAAATTAATTGGCAGATCAATGCAGTATGTGTAA	1272	0.4119	MFKPTQSEQYLISSDPNHAADFSTKKTIRYHPPEVVTALDKLSLAEEELTVACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLHSFAILSRNKGYVRPVFVDDHEPVQIQICSEPEYSTLKIFGVAILLSFDFDSFDSSSSLLIDGEYCQIVTGPDMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSHILHSCTEHSLVIIDELGRGTSTHDGMAIAHATLYYLLKQKRSMVLFVTHYPKIATYHVSHLTSHDASKNSNLDHDITYLYKLVPGVSERSFGFKVAQLAQLPSHCISRAIVMASKLEALVNSRIHGRSRKELLLDTLVIDQEKEQLMAQPHDHPHKEFGIAYKDFYLNLKAATQDDDGAKSFHLLEHARSIAKKLIGRSMQYV	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma10g02243	423	Gene3D	-	5	64	-	-
	Gma10g02243	423	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	23	414	-	-
	Gma10g02243	423	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	229	245	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Gma10g02243	423	SMART	mutATP5	148	334	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Gma10g02243	423	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	145	337	IPR027417	-
	Gma10g02243	423	Gene3D	-	96	370	IPR027417	-
	Gma10g02243	423	SUPERFAMILY	DNA repair protein MutS, domain III	22	93	IPR036187	-
	Gma10g02243	423	Pfam	MutS domain V	151	337	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
	Gma10g02243	423	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	23	414	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma10g02243	Gma-Chr10	49993379	49996899	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma10g02243	K08736		-	gmx:100789883	652.129

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma10g02243	10	49993379	49996899	Gma10g02243	10	49993379	49996899	ECH
	Gma10g02243	10	49993379	49996899	Gma20g01476	20	41887767	41896230	GST