Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma20g01447 ATGAGTTGGGTGTACGAGCAATTTATATGTGCATTTCTTGTTGGGTGCACGTTCCTTAGTGTATTATCTCATCCTGATAAAGCTCCAAAGTACACATTTCTAAGAGAAGCAGCATCTGCTCCACAAATCTTAACTTATGATTACATAGTGATTGGTGGAGGAACATGTGGGTGTCCACTAGCAGCAACTCTCTCACAAGGTGCAACAGTCTTAGTCCTTGAAAGGGGAGGCTCTCCTTACACAAACCCTGAGCAAATCAACATAAATAACTTCGTGAATTCCCTCGCTGACATAAGCCCTTCATCATTTTCCCAGCCATTTATATCCAGAGACGGGGTCCTCAATTCGCGGGCCCGTGCCCTTGGTGGTGGCTCTGTCTTGAATGCAGGGTTCTATTCAAGGGCTAGCTCCAAGTACATAGTGGATTCTGGTTGGAATGAAACTTTGGCTAAGGACTCATATCAATGGGTTGAAAAAAAAGTGGCCTTTGAGCCCCCTATGCTGCAGTGGCAATCAGCAGTGAAGGATGGTTTGCTTGAAGTAGGTGTGTTGCCTTACAATGGTTTCACTTTTGATCATTTATATGGGACTAAGGTTGGAGGGACAATTTTTGACAAGGAGGGTAACAGGCACACTGCTGCTGATTTGTTAGAGTATGCTGATCCCAAGAGGATTTCCGTTTATCTCCATGCCACAGTGCAGAAGATACTATTTAAGTATAACACAGAAAAAAGAAGGCAACAAGCTTATGGAGTAATTTTCAAAGATGCATTGGGGGTGATGCATAGAGCATACCTAAGCACAAAAGGAAAAAGTGAGATAATCTTATCAGCTGGTGCAATTGGAAGCCCACAGTTGCTGATGCTGAGTGGGATTGGTCCTGCTAACCATCTTCAGGCTCATGGAATCAAAGTGGTTTTGGATCAGCCCTTGGTGGGTCAAGGGATGGCAGATAATCCATTGAACGTTCTATTGGTTCCTTCCCCTGTGCCTGTTGAAGTCTCTCTGGTCCAAACAGTGGGCATCACTAAGTTTGGTAGCTTCATTGAAGCAGCCAGTGGATTGAGCTTGGGCCATTCTTGGTCTGAAAGGCTTCAAGGGATTTTTGAATTTGTGTCAAACCAGTCTGGCCAGCCTTCCATGTTTCCCCCAGTTGCAGACACCATTAGATCTTTAGCAAATCCAATTCTCAAAGGAGGAGTGCTACTTGAAAAGATCATAGGACCACGGTCCACGGGTCATTTGGAGCTCATAAACACAAACCCCAATGATAATCCATCAGTTACCTTCAACTATTTTAAGGACCCAGAAGACTTAAGGAAGTGTGTTGAAGGCATGAGAACCATCATAGATGTGATAAACTCAAAAGCATTCTCAAAGTTCCGCTACCATAACATGCCGGTCCAATCTCTAATAGACTTGATGTTGCACTTGCCAGTGAACTTGAGGCCTAAACATGCTAATGCTGCCTTTTCTTTAGAACAGTATTGCATAGACACTGTGCTAACAATTTGGCATTACCATGGGGGGTGCCAATCTGGTAAAGTTGTTGATCATAATTATAAGGTTATTGGTGTGGAAGCTTTGAGGGTAATTGATGGATCCACTTTTCATCGCTCACCTGGTACAAATCCTCAAGCTACTGTAATGATGCTTGGAAGAAGCATCAAACTTTCTCCAACTTTTCCCCAAAAGGCAGGTGAAGATAAAGAGCAAGAATCCGTTGTTCAGAAAGATCACTTTCAGGACTTGGGCATGAAGGTAAATCATCTAGTCATGAACTTGGTTGAAGAGCTTATAAATTGGAATGTTCAAGGAACGTTGTGTGCAGCCGCAAGAGCCGAGCTCCCACTTGATATAGTGAATAAGCAAACCAGCTATAGGGCTTCTCTTTATTGGCAGGAAATTATCATGACCACTTCATCAGATATCTTGCCAAAGGAGAGTTGCCCTGTTGCTGCTTTAGCTTAA 1971 0.4343 MSWVYEQFICAFLVGCTFLSVLSHPDKAPKYTFLREAASAPQILTYDYIVIGGGTCGCPLAATLSQGATVLVLERGGSPYTNPEQININNFVNSLADISPSSFSQPFISRDGVLNSRARALGGGSVLNAGFYSRASSKYIVDSGWNETLAKDSYQWVEKKVAFEPPMLQWQSAVKDGLLEVGVLPYNGFTFDHLYGTKVGGTIFDKEGNRHTAADLLEYADPKRISVYLHATVQKILFKYNTEKRRQQAYGVIFKDALGVMHRAYLSTKGKSEIILSAGAIGSPQLLMLSGIGPANHLQAHGIKVVLDQPLVGQGMADNPLNVLLVPSPVPVEVSLVQTVGITKFGSFIEAASGLSLGHSWSERLQGIFEFVSNQSGQPSMFPPVADTIRSLANPILKGGVLLEKIIGPRSTGHLELINTNPNDNPSVTFNYFKDPEDLRKCVEGMRTIIDVINSKAFSKFRYHNMPVQSLIDLMLHLPVNLRPKHANAAFSLEQYCIDTVLTIWHYHGGCQSGKVVDHNYKVIGVEALRVIDGSTFHRSPGTNPQATVMMLGRSIKLSPTFPQKAGEDKEQESVVQKDHFQDLGMKVNHLVMNLVEELINWNVQGTLCAAARAELPLDIVNKQTSYRASLYWQEIIMTTSSDILPKESCPVAALA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma20g01447 656 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 3 555 - -
Gma20g01447 656 Pfam GMC oxidoreductase 225 320 IPR000172 GO:0016614|GO:0050660
Gma20g01447 656 Pfam GMC oxidoreductase 46 148 IPR000172 GO:0016614|GO:0050660
Gma20g01447 656 Gene3D - 46 553 IPR036188 -
Gma20g01447 656 PANTHER OSJNBA0019K04.7 PROTEIN 3 555 - -
Gma20g01447 656 ProSitePatterns GMC oxidoreductases signature 2. 279 293 IPR000172 GO:0016614|GO:0050660
Gma20g01447 656 SUPERFAMILY FAD/NAD(P)-binding domain 44 554 IPR036188 -
Gma20g01447 656 SUPERFAMILY FAD-linked reductases, C-terminal domain 316 510 - -
Gma20g01447 656 Pfam GMC oxidoreductase 409 554 IPR007867 GO:0016614
Gma20g01447 656 Gene3D - 163 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma20g01447 Gma-Chr20 41605200 41608954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma20g01447 3 554 Miscellaneous Gene Families AT5G51950 59.683 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma20g01447 - - gmx:100780453 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma20g01447 20 41605200 41608954 Gma20g01447 20 41605200 41608954 ECH
Gma10g02270 10 50293197 50295897 Gma20g01447 20 41605200 41608954 GST