Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma10g02270 ATGGGTTGGGTGTCCGAGCAATTTATATGTGCATTTCTTGTTGGGTGCACGTTCCTTAGTGTATTATCTCATCCAGATAAAGGTAATGCTTTGTTAGAAGCAAAATCTGCTCCACAAATCTTAACTTATGACTACATAGTGATTGGTGGAGGAACATGTGGGTGTCCACTAGCAGCAACTCTTTCACAAGGTGCAAGAGTTTTAGTCCTTGAAAGGAGAGGCTCTCCTTACACAAACCCTGAGCAAATCAACATAAAGAACTTTGTGAATTCCCTCGCTGACATAAGCCCTTCATCATTTTCCCAGCCATTCATATCCAGAGATGGGGTCCTCAATTCGCGGGCCCGTGTCCTTGGTGGTGGCTCTGTCCTGAATGCAGGGTTCTATTCAAGGGCTAGCTCCACCTACATAAGAGATTCTGGTTGGAATGAAACTTTGGCTAAGGACTCATATAAATGGGTTGAAGAAAAGGTGGCCTTTGAGCCCCCTATGCTGCAGTGGCAATCAGCAGTGAAGGATGGTTTGCTTGAAGTAGGTGTGTTGCCTTACAGTGGTTTCACTTTTGATCACTTATATGGGACTAAGGTTGGAGGGACAATTTTTGATAAGGAGGGTAACAGGCACACAGCAGCTGATTTGTTAGAGTATGCTGATCCCAAGAGAATTTCTGTTTATCTCCATGCCACAGTGCAGAAGATACTATTTAAGTATAACACAGAAAAAAGAAGGCCACAAGCTTATGGAGTAATTTTCAAAGATGCATTGGGAGTGATGCATAGAGCATACTTAAGCACAAAAGGAAAGAATGAGTTAATCTTATCAGCTGGTGCAATTGGAAGCCCACAGTTGCTGCTGCTGAGTGGGATTGGTCATGCAAACCATCTTGAGGCTCATGGAATAAAAGTGGTTTTGGATCAGCCCTTGGTGGGTCAAGGGATGGCAGATAATCCATTGAATGTTCTAGTGGTTCCTTCCCCGGTGCCTGTTGAAGCCTCTCTTGTCCAAACATTGGGCATCACTAAGTTTGGTAGCTTCATTGAAGCAGCCAGTGGATTGAGCTTGGGCCATTCTTGGTCTGAAAGGCTTCAAGGGATTTTTGAATTTGTGTCAAACCAGTCTGGCCAGCCTTCAACGTTTCCCCCAGAAGCCAAGGAGAGTGTTGCAGAAACCGTTAGATCTTTAGCCAATCCAATTCTCAAAGGAGGAGTCCTACTTGAAAAGATCATAGGACCACGCTCCACGGGTCATTTGGAGCTCATAAACACAAATCCCAATGATAACCCATCAGTTACCTTCAACTATTTTAAGGGTCCAGAAGACTTGAGGAAGTGTGTTGAAGGCATGAAAACCATCATAGATGTGATAAACTCAAGCATTCTCAAAATTCCGCTACCACAACATGCCAGTCCAAGCTCTAATAGACTTGATGTTGCACTTGCCAGTGAACCTGAGGCCTAA 1458 0.4417 MGWVSEQFICAFLVGCTFLSVLSHPDKGNALLEAKSAPQILTYDYIVIGGGTCGCPLAATLSQGARVLVLERRGSPYTNPEQINIKNFVNSLADISPSSFSQPFISRDGVLNSRARVLGGGSVLNAGFYSRASSTYIRDSGWNETLAKDSYKWVEEKVAFEPPMLQWQSAVKDGLLEVGVLPYSGFTFDHLYGTKVGGTIFDKEGNRHTAADLLEYADPKRISVYLHATVQKILFKYNTEKRRPQAYGVIFKDALGVMHRAYLSTKGKNELILSAGAIGSPQLLLLSGIGHANHLEAHGIKVVLDQPLVGQGMADNPLNVLVVPSPVPVEASLVQTLGITKFGSFIEAASGLSLGHSWSERLQGIFEFVSNQSGQPSTFPPEAKESVAETVRSLANPILKGGVLLEKIIGPRSTGHLELINTNPNDNPSVTFNYFKGPEDLRKCVEGMKTIIDVINSSILKIPLPQHASPSSNRLDVALASEPEA 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma10g02270 485 ProSitePatterns GMC oxidoreductases signature 2. 276 290 IPR000172 GO:0016614|GO:0050660
Gma10g02270 485 SUPERFAMILY FAD/NAD(P)-binding domain 41 339 IPR036188 -
Gma10g02270 485 Pfam GMC oxidoreductase 411 458 IPR007867 GO:0016614
Gma10g02270 485 Gene3D - 160 461 - -
Gma10g02270 485 PIRSF Alcohol_oxidase 19 482 IPR012132 GO:0050660
Gma10g02270 485 PANTHER OSJNBA0019K04.7 PROTEIN 4 459 - -
Gma10g02270 485 Pfam GMC oxidoreductase 43 145 IPR000172 GO:0016614|GO:0050660
Gma10g02270 485 Pfam GMC oxidoreductase 222 317 IPR000172 GO:0016614|GO:0050660
Gma10g02270 485 PANTHER GLUCOSE-METHANOL-CHOLINE (GMC) OXIDOREDUCTASE FAMILY PROTEIN 4 459 - -
Gma10g02270 485 Gene3D - 43 434 IPR036188 -
Gma10g02270 485 SUPERFAMILY FAD-linked reductases, C-terminal domain 313 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma10g02270 Gma-Chr10 50293197 50295897 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma10g02270 8 457 Miscellaneous Gene Families AT5G51950 57.609 3.48e-180 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma10g02270 - - gmx:100780453 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma10g02270 10 50293197 50295897 Gma10g02270 10 50293197 50295897 ECH
Gma10g02270 10 50293197 50295897 Gma20g01447 20 41605200 41608954 GST