Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01989 ATGGCGGGTTGGGAGAGGGCTGCGATTCTAGTTCTGCTTAAGGAATCCTGCCGTAGCCAGAAGCAGGTTCGAGAAATTCAAGCGCAGCTCATCCTCCAGAAAATCTACCCAAACACCAGAGTCGCTCAACACTTCATCGGTGCGTGCCAATCACACGGCCTTCTCAACACTGCTCTTGTTCTCTTCACCACCCTCCTCCCCCACCCCCACGTCTACACCTTCAACACCCTCATCAGAGTCTTCTCCCAATCCCATTCCCCGCACACCCCTCTCTTCATCTACACCCACATGCGCCGCTACTCCCTCCTCCCCAACAACTTCACCTTCCCGCCCCTCTTCAAGTCCCTCTCCGACACCCGCCAAGTCACCCAGGCGCAATGCGTCTACACCCACGTCCTCAAACTCGGCCACCACCAAGATATCTACGTCCGCAACTCCCTCCTCGACGTCTACGCCTCCTGCGGCCACGTCGCATTGTGTCGCCAACTGTTCGATGAAATGCTTCACAGGGATGTTGTGTCCTGGAGCGTGTTGATCACTGGGTACAACAGCGTTGGCGGCTACGACGATGCCTTGGTTGTCTTTGAACAGATGCAGTATGCGGGGTTTGTTCCTAATAGGGTCACGATGATAAACGCGTTGCACGCTTGTGCTCACTCTGGGAATGTTGACATGGGGACGTGGATACATGGTGTCATAAAGAGGGAGGGTTGGGAATTGGATGTGGTATTGGGGACGGCGCTGATTGATATGTATGGGAAGTGTGGGAGAGTGGAAGAGGGGTTGAATGTGTTCCGGAGCATGAAGGAGAAGAATGTGTTTACTTGGAATACGGTTATTAAAGGGCTAGCTTTGGCCAAGAGTGGACAAGAAGCAATTTGGTGGTTTAACAAAATGGAGAAAGATGGAGTTAGACCGGATGAAGTGACTTTGTTGGCGGTGCTATCTGCGTGCAGTCACTCGGGTTTGGTGGACAAGGGTAGAGAGATTTTTGGTTTGTTGGTTGATGGGAGGTACGGGTGTTGTCCTAATGTCATACACTATGCTTGCATGGTTGACGTGTTGGCGCGTTCTGGGCGTTTGAAAGAGGCTGTTGAGTTCATGGGATGTATGCCTTTTGGACCCACCAAGGCTATGTGGGGATCGTTGTTGGTTGGTTCTAAAGCTCAGGGTGACTTGGAGTTGGGCCTGCTAGCGGCTGGAAAGCTCATTGAATTGGAGCCAGATAACACTGTTTATTATGTTCATCTATCAAATCTGTATGCGGCGATGGGAAGATGGACTGATGTTGAGAAAGTGAGGGGGGTGATGAAGGATAGGCAACTGACCAAGGACTTGGGGTGTAGTTCTGTGGAGGTACAACACCAGAGGAATGTTGGCGAACTTTTGGCATAG 1395 0.5161 MAGWERAAILVLLKESCRSQKQVREIQAQLILQKIYPNTRVAQHFIGACQSHGLLNTALVLFTTLLPHPHVYTFNTLIRVFSQSHSPHTPLFIYTHMRRYSLLPNNFTFPPLFKSLSDTRQVTQAQCVYTHVLKLGHHQDIYVRNSLLDVYASCGHVALCRQLFDEMLHRDVVSWSVLITGYNSVGGYDDALVVFEQMQYAGFVPNRVTMINALHACAHSGNVDMGTWIHGVIKREGWELDVVLGTALIDMYGKCGRVEEGLNVFRSMKEKNVFTWNTVIKGLALAKSGQEAIWWFNKMEKDGVRPDEVTLLAVLSACSHSGLVDKGREIFGLLVDGRYGCCPNVIHYACMVDVLARSGRLKEAVEFMGCMPFGPTKAMWGSLLVGSKAQGDLELGLLAAGKLIELEPDNTVYYVHLSNLYAAMGRWTDVEKVRGVMKDRQLTKDLGCSSVEVQHQRNVGELLA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01989 464 Pfam PPR repeat family 271 319 IPR002885 -
Gma19g01989 464 PANTHER - 9 459 - -
Gma19g01989 464 Pfam E motif 392 452 IPR046848 -
Gma19g01989 464 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 9 459 - -
Gma19g01989 464 Pfam PPR repeat 340 371 IPR002885 -
Gma19g01989 464 Gene3D Tetratricopeptide repeat domain 338 459 IPR011990 GO:0005515
Gma19g01989 464 Gene3D Tetratricopeptide repeat domain 230 337 IPR011990 GO:0005515
Gma19g01989 464 Gene3D Tetratricopeptide repeat domain 91 229 IPR011990 GO:0005515
Gma19g01989 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Gma19g01989 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 271 IPR002885 -
Gma19g01989 464 Pfam PPR repeat 145 171 IPR002885 -
Gma19g01989 464 Pfam PPR repeat 173 203 IPR002885 -
Gma19g01989 464 TIGRFAM PPR: pentatricopeptide repeat domain 246 272 IPR002885 -
Gma19g01989 464 TIGRFAM PPR: pentatricopeptide repeat domain 145 173 IPR002885 -
Gma19g01989 464 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Gma19g01989 464 TIGRFAM PPR: pentatricopeptide repeat domain 274 308 IPR002885 -
Gma19g01989 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01989 Gma-Chr19 48941559 48942953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01989 104 453 Glycoside Hydrolase AT3G49170 33.428 1.99e-61 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01989 - - gmx:102664320 938.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01989 19 48941559 48942953 Gma19g01989 19 48941559 48942953 ECH
Gma19g01989 19 48941559 48942953 Gma03g01952 03 45329062 45329860 GST