Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01952 ATGCAGTATGCGGGGTTTGTGCCTAATAGGGTCACGATGATAAACGCGTTGCACGCCTGTGCTCACTATGGGAATGTTGAAATGTGGGCGTGGATACGTGGTGTCATAAAGAGGGAGGGTTGGGAATTGGATATGGAGAAGAATGTATTTACCTGGAATGCCGTTATTAAAGGGCTAGCTTTGGCCAAGAGTGGACAAGAAGCAATTTGGTGGTTTAACAGAACGGAGAAAGATGGAGTTAAAGCAGATGAAGTGACTTTGTTGGCAGTGCTAACTGCGTGCAGTCACTCGGGTTTGGTGGACAAGGGTCGAGAGATTTTTGGTTTGTTGGTTGATGGGAGGTACGGGGGTGACTTGGAGTTGGCCCTGCTAGCGGCCAGAAAGCTCATTGAATTGGAGCCGGATAACACTGCCTATTATATTCATCTATCAAATTTGTATGCGGTGATGGGAAGATGGAGCGATGTTGAGAAAGAGAGGGGGTTGATGAAGGATAGACAACTGACTAAGGACTCGGGGTGCAGTTCTGTGGAGGTAGAACACCAGAGTCATGTTAGTGAACTTTTGGCATAG 573 0.4729 MQYAGFVPNRVTMINALHACAHYGNVEMWAWIRGVIKREGWELDMEKNVFTWNAVIKGLALAKSGQEAIWWFNRTEKDGVKADEVTLLAVLTACSHSGLVDKGREIFGLLVDGRYGGDLELALLAARKLIELEPDNTAYYIHLSNLYAVMGRWSDVEKERGLMKDRQLTKDSGCSSVEVEHQSHVSELLA 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01952 190 Pfam E motif 118 178 IPR046848 -
Gma03g01952 190 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 46 116 - -
Gma03g01952 190 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 117 184 - -
Gma03g01952 190 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 45 - -
Gma03g01952 190 Gene3D Tetratricopeptide repeat domain 1 187 IPR011990 GO:0005515
Gma03g01952 190 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 48 82 IPR002885 -
Gma03g01952 190 Pfam PPR repeat 50 80 IPR002885 -
Gma03g01952 190 Pfam PPR repeat 85 110 IPR002885 -
Gma03g01952 190 PANTHER - 1 45 - -
Gma03g01952 190 PANTHER - 117 184 - -
Gma03g01952 190 PANTHER - 46 116 - -
Gma03g01952 190 SUPERFAMILY TPR-like 117 152 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01952 Gma-Chr3 45329062 45329860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01952 47 184 Glycoside Hydrolase AT3G49170 33.155 5.31e-24 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01952 - - gmx:102664320 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01989 19 48941559 48942953 Gma03g01952 03 45329062 45329860 GST