Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01942 ATGGCGGTTTCCGAAGAAGAATGCTCTTCTGCGAAGTCAGGTTCATCAGGTCCCTCTTCTTCGTCTTCCTCCGCCTCGCGTTACTACCTCTCCAAGTGCGTTTTCAGAGGCAGCGTCGTTCTTCATGTCCTCCACGCTCACATCCGTTCTCCCTCCTCAAACGACGTCGTTTTCGGCAAGGAGACATCTATAGAATTGGTGGTTATTGATGAGGATGGGAATGTGCAATCTGTGTTTGATCAGCCTGTCTTTGGCACCCTCAAAGATCTTGCCATATTGCCCTGGAATGAGAAATTTCGTGCCGCGCGTGATCCGCAGCTGTGGGGTAAAGaccttttggttgctacatctgattctgggaagttgtcgttgcttacattttgcaatgaaatgcataggtttgtacctgtaacacatattcagctatctaatcctggaaaccaaatggattttcctggaagaaagctagcagttgattccagtggttgttttattgctgccagtgcatatgaagatcggttggctttgttttctttgtcaatgtccagtggtgatatcattgatgagagaattgtatatccttctgaaagtgaagggactgcaagtacttccagaagcatccaaagaaccagtataagtgttactatttggagcatctgtttcatttcacaagattccagacaaccaagcaaggagcataatcctgtactagctcttattataaatagGAGGGAAGCGCTTCTAAATGAACTGCTATTATTGGAATGGAATGTTAAAGCACGTAAAATATTTGTTATTTCTCAGTATGTTGAAGCTGGGCCTCTAGCACATGACATTGTTGAAGTTCCCAACTCTGGGGGACTTGCATTTCTATTCAGGGCTGGTGATGTTCTCTTAATGGATCTTAGAGATCATCGCAACCCATCCTGTGTCTGTAAGACTAACTTGAACTTCTTACCCCATGCCATGGAAGAGCAGACTTATGTGGAAGACTCTTGTAAATTACACGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGGAGCTGAGTGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCTAATTCAGGTTACAAATACATATGCTCGTGGAGTTGGGAACCTGAAAATAATAGAGATCCTAAGATGATTTTCTGTGTAGATACTGGGGAATTTTTTATGATTGAAGTCCTTTTTAATTCTGAAGGCCCTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGTCTACCCTGTAAAGCACTTTTGTGGGTTGAAGGTGGATATCTTGCTGCCCTTGTGGAAATGGGGGATGGTATGGTCCTGAAATTGGAAGATGGAAGGCTGTGTTATACAAACCCTATTCAAAACATTGCACCAATCTTGGATATGGAAGTTGTAGATTATCATGATGAGAAGCATGATCAAATGTTTGCTTGCTGTGGTGTGGCACCAGAGGGCTCATTAAGGATTATTCGAAATGGTATTAATGTGGAAAATCTACATAGGACTGCTTCTATATATCAAGGGGTAAGTGGTACTTGGACTGTCCGAATGAAAGTTACGGATTCACACCATTCTTTTCTAGTTCTATCATTTCTTGACGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCAGTCGGTTTCCAACCTAATGTCTGTACTTTGGCATGCGGCCTTGTGACTGATGGTTTGCTTGTTCAGATCCACCGATCTACTGTTAAGCTTTGTTTGCCCACTAAGGCTTCTCATTCTGAAGGTATCCCTTTGTCCTCTCCTATTTGCACATCTTGGTCTCCAGACAATGTGGGTATTAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCACTAACCCATGCTTTCTGTTTATCCTTGGGGTTAGATTGCTATCAGTTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAATTATCGTGCATTTCCATCCCCGGACAAGAAATTGAGCAAAAACAATCAAATTCGTCCATTTCTGCTAATAATAGTAGCATCTCTTCTTTCCAAAGTGGGGTGGACATCAATAAAACCTTTGTTATTGGCACACATAAGCCTTCCGTGGAAATTTGGTTTTTTGCACCAGGTGGAGGAATTACAGTAGTTGCTTGTGGGACAATTTCATTAACAAATACAATAGGGTCTGTCAAAAGTGATTCTATACCCCAAGATGTACGGCTTGTATCTGCTGATAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTCCTTCGCTTCGAGTGGCCGGCAGAACCATGTCCTTCATCACCAATAAATATGGTGGATACTGCTTTATCTTCTACAAATTTGGTAAATTCTGTGACTAATGCTTTTGACAAGAGAAATGACCTTCCTTCCATGCTTCAATTGATCGCCATTCGACGAATTGGCATTACTCCAATTTTTTTGGTGCCCCTGGGTGATACACTGGATGCCGATATAATTGTTCTTGCTGATAGGCCTTGGCTGTTGCATAGTGCAAGACAAGGCCTTTCCTATACTTCTAtctcatttcaaccagccacacatgtaactcctgtttcctgtgttgagtttccaaaaggaatattatttgttgcagaaaacagtttacatctggtggagatgggccacggcaagagacttaatgtgcagaagtttcatttagagggcactccacggaaggtcttgtatcatgatgaaagcaagatgttgcttgtgatgaggactgaactgaattgtggtccatgtttgtctgacatatgttgtgtggattccctaagtgggtcagtactgtcatcttttagacttgaacttggagaaacaggaaaatctatggaattagtaagagttggaagtgagcaggtgcttgttgttggaactagtctgtcttctggtccgcacacaatgcccactggtgaagctgaaagttgcaagggtcgtcttcttgttctctgtcttgatcatgtgcaaaattcagatagtggttcaatgacattctgttcaaaggcagggtcatcaTCTCAAAAAACTTCACCATTCCATGAAATTGTTACATATGCTCCTGAACTgttatcgagcagtagccttggcagcagtccggatgataatagttctgatggcatcaaacttcatgaaaatgaagtatggcagttccgattggcttatgcaactaaatggccaggagttgtacttaaaatctgtccttatcttgatcattacttcttggcaacagctggcaatgctttctatgtttgtggtttccctaatgacaatcctcaaagagtgagaaggtatgctatgggaaggacgcgctacatgataacatctttgactgcacatttgactagaattgcagttggtgattgtcgtgatggtatccttttatattcttatcatgagGAAGCAAAAAAATTGGAGCTACTTTACAATGACCCATCACAAAGGATAGTTGCTGATTGCATTCTCATGGATGCTGATACTGCTGTTGTTTCGGATCGTAAAGGAAGCATTGCTGTTTTATGTTCAGATCACTTGGAAGCATCAGACAATGCAGGTGCACAATGCAACATGACACTAAGCTGCGCTTATTTCATGGCTGAGATAGCTATGAGCATCAAGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGGAAGGTGGAAATGGCCCCAAGACAAATGTTGATTCATTACAAAATACTATTATTGCCAGTACCCTGTTAGGAAGCATAATGATCTTCATTCCTTTATCAAGGGAAGAATATGAGCTCTTAGAAGTAGTGCAAGCAAGACTTGTTGTCCATCATTTGACAGCGCCTGTTCTAGGAAATGATCATCATGAGTTTCGCAGTCGCGAAAATCGGGTTGGAGTACCCAAGATACTTGATGGTGACATCTTGACCCAGTTTCTGGAGCTGACAAGTATGCAGCAAAAGATGATTTTGTCACTGGAGCAACCGGATATGGTAAAACCAAGTTTGAAGCCACTCCTACCCTCTCATGTTTCTGTAAATCAGGTGGTTCAACTTCTTGAACGAGTCCATGATGCTCTGAACTAA 4122 0.2948 MAVSEEECSSAKSGSSGPSSSSSSASRYYLSKCVFRGSVVLHVLHAHIRSPSSNDVVFGKETSIELVVIDEDGNVQSVFDQPVFGTLKDLAILPWNEKFRAARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFVPVTHIQLSNPGNQMDFPGRKLAVDSSGCFIAASAYEDRLALFSLSMSSGDIIDERIVYPSESEGTASTSRSIQRTSISVTIWSICFISQDSRQPSKEHNPVLALIINRREALLNELLLLEWNVKARKIFVISQYVEAGPLAHDIVEVPNSGGLAFLFRAGDVLLMDLRDHRNPSCVCKTNLNFLPHAMEEQTYVEDSCKLHDVDDERFSVAACALLELSDYDPMCIDSDNGGANSGYKYICSWSWEPENNRDPKMIFCVDTGEFFMIEVLFNSEGPKVNLSECLYKGLPCKALLWVEGGYLAALVEMGDGMVLKLEDGRLCYTNPIQNIAPILDMEVVDYHDEKHDQMFACCGVAPEGSLRIIRNGINVENLHRTASIYQGVSGTWTVRMKVTDSHHSFLVLSFLDETRILSVGLSFTDVTDSVGFQPNVCTLACGLVTDGLLVQIHRSTVKLCLPTKASHSEGIPLSSPICTSWSPDNVGISLGAVGHNFIVVSTTNPCFLFILGVRLLSVYQYEIYEMQHLVLQNELSCISIPGQEIEQKQSNSSISANNSSISSFQSGVDINKTFVIGTHKPSVEIWFFAPGGGITVVACGTISLTNTIGSVKSDSIPQDVRLVSADKYYVLAGLRNGMLLRFEWPAEPCPSSPINMVDTALSSTNLVNSVTNAFDKRNDLPSMLQLIAIRRIGITPIFLVPLGDTLDADIIVLADRPWLLHSARQGLSYTSISFQPATHVTPVSCVEFPKGILFVAENSLHLVEMGHGKRLNVQKFHLEGTPRKVLYHDESKMLLVMRTELNCGPCLSDICCVDSLSGSVLSSFRLELGETGKSMELVRVGSEQVLVVGTSLSSGPHTMPTGEAESCKGRLLVLCLDHVQNSDSGSMTFCSKAGSSSQKTSPFHEIVTYAPELLSSSSLGSSPDDNSSDGIKLHENEVWQFRLAYATKWPGVVLKICPYLDHYFLATAGNAFYVCGFPNDNPQRVRRYAMGRTRYMITSLTAHLTRIAVGDCRDGILLYSYHEEAKKLELLYNDPSQRIVADCILMDADTAVVSDRKGSIAVLCSDHLEASDNAGAQCNMTLSCAYFMAEIAMSIKKGSYSYRLPADDVLEGGNGPKTNVDSLQNTIIASTLLGSIMIFIPLSREEYELLEVVQARLVVHHLTAPVLGNDHHEFRSRENRVGVPKILDGDILTQFLELTSMQQKMILSLEQPDMVKPSLKPLLPSHVSVNQVVQLLERVHDALN 1373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01942 1373 MobiDBLite consensus disorder prediction 1 24 - -
Gma19g01942 1373 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 111 669 IPR018846 -
Gma19g01942 1373 MobiDBLite consensus disorder prediction 8 24 - -
Gma19g01942 1373 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 22 1370 - -
Gma19g01942 1373 Gene3D - 502 898 IPR015943 GO:0005515
Gma19g01942 1373 Pfam CPSF A subunit region 939 1326 IPR004871 GO:0003676|GO:0005634
Gma19g01942 1373 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 22 1370 - -
Gma19g01942 1373 Gene3D - 39 460 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01942 Gma-Chr19 48560518 48576580 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01942 K12830 - gmx:100799711 2668.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01942 19 48560518 48576580 Gma19g01942 19 48560518 48576580 ECH
Gma19g01942 19 48560518 48576580 Gma03g01901 03 44915573 44930148 GST