Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01901 ATGGCGGTTTCTGAAGAAGAATGCTCTTCTGCGAATTCAGGTTCAGGTCCCTCTTCTTCGTCTTCCTCCGCCTCGGCGCGCTACTACCTCTCCAAGTGCGTTCTCAGAGGCAGCGTCGTTCTTCAGGTTCTCCACGCTCACATCCGTTCTCCCTCCTCAAACGACGTCATTTTCGGCAAGGAGACATCTATTGAATTGGTGGTTATTGACGAGGATGGGAATGTGCAATCTGTGTGTGATCAGCCTGTCTTTGGCACCGTCAAAGATCTTGCCATATTGCCCTGGAATGAGAAATTTCGTGTCGCACGTGATCCGCAGCTGTGGGGTAAAGaccttttggttgctacatctgattctgggaagttgtcgttgctcacattttgcaatgaaatgcacaggtttattcctgtaacacatattcagctatctaatcctggaaaccaaatttatcttcctggaagaaagttagcagttgattccagtggttgttttattgcttccagtgcatacgaagatcggctggctttgttttctttgtcaatgtctagtggtgatatcattgatgagagaattgtatatccttctgaaaatgaagggactgcaagtacttccagaagcatccagagaatcggtatacgtggtactatttggagcatctgtttcatttcacaagattccagacaaccaagcaaggagcataatcctgtactagctgttattataaatagGAGGGGAGCGCTTCTAAATGAACTGCTATTATTGGAATGGAATGTTAAAGCACATAAAATATTTGTTATTTCTCAGTATGTTGAAGCTGGGCCTCTAGCACATGACATTGTTGAAGTTCCCAACTCCGGGGGACTTGCATTTCTATTTAGGGCTGGTGATGTTCTCTTAATGGATCTTAGAGATCATCGCAACCCATCCTGTGTCTGTAAGACTAACTTGAACTTTTTACCCAATGCCATGGAAGAGCAGACTTATGTGGAAGAGTCTTGTAAATTACATGATGTTGATGATGAACGCTTTAGTGTTGCTGCCTGTGCTTTGTTGGAGCTGAGCGATTATGATCCTATGTGCATAGACAGTGACAATGGTGGTGCCAATTCAGGTTACAAATACATATGCTCGTGGAGTTGGGAACCTGAAAATAATAGAGATCCTAGGATGATCTTCTGTGTAGATACTGGAGAATTTTTTATGATTGAAGTTCTTTTTGATTCTGAAGGCCCTAAAGTTAATCTGTCTGAGTGTCTCTATAAAGGTCTACCCTGTAAAGCACTTTTGTGGGTTGAAAGTGGATATCTAGCTGCCCTTGTGGAAATGGGGGATGGTATGGTCCTGAAATTGGAAGATGGAAGGCTGTGCTATATAAACCCTATTCAAAACATTGCACCAATCTTGGATATGGAAGTTGTAGATTATCATGATGAGAAGCAAGATCAAATGTTTGCTTGCTGTGGTGTGGCACCAGAGGGGTCATTAAGGATTATTCGAAATGGTATTAATGTGGAAAATCTACATAGGACTGCTTCTATATATCAAGGGGTAACTGGTACTTGGACGGTCCGAATGAGAGTTACGGATTCACACCATTCTTTTCTGGTTCTATCATTTGTTGAGGAAACCAGAATATTGTCAGTTGGCTTAAGTTTTACTGATGTGACTGATTCAGTTGGTTTCCAACCTAATGTCTGTACTTTGGCATGCGGCCTTGTGACTGATGGTTTGCTTGTCCAGATCCACAAATCTACTGTTAAGCTTTGTTTGCCCACTAAGGCTGCTCATTCTGAAGGTATCCCTTTGTCCTCTCCTATTTGCACATCTTGGTCTCCAGACAATGTGAGTATTAGTTTGGGGGCAGTTGGGCATAATTTCATAGTTGTGTCAACCTCTAACCCATGCTTTCTGTTTATCCTTGGGGTTAGATTGCTATCAGCTTATCAATATGAAATTTATGAAATGCAACATTTGGTACTGCAGAATGAGTTATCATGCATTTCCATCCCTGGACAAGAAATTGAGCAAAAACAATCAAATTCATCCATTTCAGCTAATAATAGTAGCATCTCTTCTTTTCAAATTCAAAGTGGAGTGGACATCAATAAAACCTTTGTTATTGGCACACATAGGCCTTCTGTGGAAATTTGGTATTTTGCACCAGGTGGAGGAATTACAGTAGTTGCTTGTGGGACAATTTCATTAACGAATACAGTAGGGACTGCCATAAGTGGTTGTGTACCCCAAGATGTGCGGCTTGTATTTGTTGGTAAGTATTATGTTCTTGCTGGATTGAGGAATGGAATGCTCCTTCGCTTTGAGTGGCCGGCGGAACCATGTCCTTCATCACCAATAAACATAGTGGATACTGCTTTATCTTCTATAAATTTGGTAAATTCTGTGACTAATGCTTTTGACAAGAGAAATGACTTTCCTTCCATGCTTCAATTGATTGCCATTAGACGAATTGGCATTACTCCAGTTTTCTTGGTGCCCCTGGGTGATACACTGGATGCCGATATAATTACTCTTAGTGATAGGCCTTGGTTGTTGCATAGTGCAAGACACAGCCTGTCCTATTCTTCTAtctcatttcaaccatccacgcatgtaactcctgtttgctctgttgagtgtccaaaaggaatactatttgttgcagaaaacagtttacatctggtggagatggtccacagcaagagacttaatatgcagaagtttcatttagagggcactccacggaaggtcttgtatcatgatgaaagcaagatgttgcttgtgatgaggactgaactgaattgtggtacatgtttgtctgacatatgtattatggatcccctaagtgggtcagtactgtcgtcttttagacttgaacttggagaaacaggaaaatccatggaattagtaagagttggaagtgagcaggtgcttgttgttggaactagtctgtcttcgggtccacacacaatggccactggtgaagctgaaagttgcaagggtcgtcttcttgttctttgtcttgatcatgtgcaaaattcagatagtggttcagtgacgttctgttcaaaggcagggtcatcaTCTCAAAAAACTTCACCATTCCGTGAAATTGTTACATATGCTCCTGAACAgttatcgagcagtagccttggcagcagtccagatgataatagttctgatggcatcaaactcgatgaaaatgaagtatggcagttccgattaacttttgcaactaaatggccgggagttgtacttaaaatctgtccttatcttgatcgttacttcttggcaactgctggcaatgctttctatgtttgtggtttccctaatgacaatcctcaaagagtgagaaggtatgctatgggaagggcgcgcttcatgataacatctttgactgcacattttactagaattgcagttggtgattgccgtgatggtatccttctatattcttatcatgagGAAGCAAAAAAATTGGAGCTACTTTACAATGACCCATCACTTAGGTTAGTTGCTGATTGCATTCTCATGGATGCTGATACAGCTGTTGTTTCGGATCGTAAAGGAAGCATTGCTGTTTTATGTTCAGATCACTTGGAAGACAATGCAGGTGCACAATGCAACATGGCACTAAGCTGTGCTTATTTCATGGCTGAGATAGCCATGAGCATCAAGAAGGGCTCATATTCATACAGACTTCCAGCTGATGATGTTTTGCAAGGTGGAAATGGCCCCAAGACAAATGTTGATTCATTACAAAATACTATTATTGCCACTACCCTGTTAGGAAGCATAATGATCTTCATCCCTTTATCAAGGGAAGAATATGAGCTCTTAGAAGCAGTGCAAGCAAGACTTGTTGTCCATCATTTGACAGCACCTGTTCTAGGAAATGATCATAATGAGTTTCGCAGTCGCGAAAATCGGGTTGGAGTACCCAAGATACTTGATGGTGACATGTTGACCCAGTTTCTGGAGCTGACAAGTATGCAGCAAAAGATGATTTTGTCTTTGGAGCTACCGGATATGGTAAAACCAAGTTTGAAGCCACTCCTACCCTCCCATGTTTCTGTAAATCAGAACGCGGAACATGCATATGCAGTTCTAAACAATATTGTCCGTCAACGGTTGCGTGTCTGCTTCTCAAAGTGTTGTCAGATATAG 4164 0.2961 MAVSEEECSSANSGSGPSSSSSSASARYYLSKCVLRGSVVLQVLHAHIRSPSSNDVIFGKETSIELVVIDEDGNVQSVCDQPVFGTVKDLAILPWNEKFRVARDPQLWGKDLLVATSDSGKLSLLTFCNEMHRFIPVTHIQLSNPGNQIYLPGRKLAVDSSGCFIASSAYEDRLALFSLSMSSGDIIDERIVYPSENEGTASTSRSIQRIGIRGTIWSICFISQDSRQPSKEHNPVLAVIINRRGALLNELLLLEWNVKAHKIFVISQYVEAGPLAHDIVEVPNSGGLAFLFRAGDVLLMDLRDHRNPSCVCKTNLNFLPNAMEEQTYVEESCKLHDVDDERFSVAACALLELSDYDPMCIDSDNGGANSGYKYICSWSWEPENNRDPRMIFCVDTGEFFMIEVLFDSEGPKVNLSECLYKGLPCKALLWVESGYLAALVEMGDGMVLKLEDGRLCYINPIQNIAPILDMEVVDYHDEKQDQMFACCGVAPEGSLRIIRNGINVENLHRTASIYQGVTGTWTVRMRVTDSHHSFLVLSFVEETRILSVGLSFTDVTDSVGFQPNVCTLACGLVTDGLLVQIHKSTVKLCLPTKAAHSEGIPLSSPICTSWSPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELSCISIPGQEIEQKQSNSSISANNSSISSFQIQSGVDINKTFVIGTHRPSVEIWYFAPGGGITVVACGTISLTNTVGTAISGCVPQDVRLVFVGKYYVLAGLRNGMLLRFEWPAEPCPSSPINIVDTALSSINLVNSVTNAFDKRNDFPSMLQLIAIRRIGITPVFLVPLGDTLDADIITLSDRPWLLHSARHSLSYSSISFQPSTHVTPVCSVECPKGILFVAENSLHLVEMVHSKRLNMQKFHLEGTPRKVLYHDESKMLLVMRTELNCGTCLSDICIMDPLSGSVLSSFRLELGETGKSMELVRVGSEQVLVVGTSLSSGPHTMATGEAESCKGRLLVLCLDHVQNSDSGSVTFCSKAGSSSQKTSPFREIVTYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLTFATKWPGVVLKICPYLDRYFLATAGNAFYVCGFPNDNPQRVRRYAMGRARFMITSLTAHFTRIAVGDCRDGILLYSYHEEAKKLELLYNDPSLRLVADCILMDADTAVVSDRKGSIAVLCSDHLEDNAGAQCNMALSCAYFMAEIAMSIKKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIATTLLGSIMIFIPLSREEYELLEAVQARLVVHHLTAPVLGNDHNEFRSRENRVGVPKILDGDMLTQFLELTSMQQKMILSLELPDMVKPSLKPLLPSHVSVNQNAEHAYAVLNNIVRQRLRVCFSKCCQI 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01901 1387 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR (CPSF) A SUBUNIT PROTEIN 22 1362 - -
Gma03g01901 1387 Pfam CPSF A subunit region 939 1326 IPR004871 GO:0003676|GO:0005634
Gma03g01901 1387 PANTHER DNA REPAIR/RNA PROCESSING CPSF FAMILY 22 1362 - -
Gma03g01901 1387 Gene3D - 502 901 IPR015943 GO:0005515
Gma03g01901 1387 Gene3D - 39 464 IPR015943 GO:0005515
Gma03g01901 1387 MobiDBLite consensus disorder prediction 1 23 - -
Gma03g01901 1387 Pfam Mono-functional DNA-alkylating methyl methanesulfonate N-term 111 669 IPR018846 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01901 Gma-Chr3 44915573 44930148 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01901 K12830 - gmx:100806799 2714.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01901 03 44915573 44930148 Gma03g01901 03 44915573 44930148 ECH
Gma19g01942 19 48560518 48576580 Gma03g01901 03 44915573 44930148 GST