Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01918 ATGAGCACCATGGATTCCTCTTCCATCTATGGTGTCTCACACAGACACTTCCTCACCCTCTTCCTTCTTTTCCTTCTGCCACTCCATTCTCACTCTGCATTCTCTCATAACTCTTCTTCCTCGTCTCAAATTAACTCTAATTCCATCCTTGTCGCGCTTCTCGATTCCCATTACACCGAACTCGCTGAGCTTGTTGAGAAAGCGCTTCTTCTCCAGAAGCTAGAAGAAGCCGTCGGCAACCACAACATCACCATCTTCGCGCCGCGAAACCAAGCCCTGGAACGCGACCTAGACCCTGAATTTAAGCGATTCCTTCTCGAGCCTCGCAATCTTAGGTCGCTTCAGACGCTCTTGATGTCTCACATTCTCCCGACGCGAATCGCCTCTCACCACTGGCCCTCCGACGACCTCCGCCACCGCACTCTCTCCGATCACCGCCTGCATTTGGCCTCCAAGCCCTCCGGCCATAGAACCGTCGACTCCGCCGAGAtcctccgcgccgacgacgtcctccgccccgacggcgtcATCCACGGCATCGAGCGTCTCATCGTCCCCCGATCCGTACAGGAGGACTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTTCCCGAGGGAGCGCCGGAGGTCGATCCCCGTACTCACCGCCTCAAGAAGCCCGCTCCCGTTCCCGCCGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCATGGCACCAGGCCCATCCCTCGCGCCGGCGCCGGCGCCGGGACCGGGAGGCCCGAAGCACCACTTCAACGGCGAGCGCCAGGTCAAGGACTTCATCCACACACTCTTACATTACGGAGGTTACAACGAAATGGCTGATATTCTCGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCAGAAGGTTACGTTCTCACCGTTTTGGCTCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCTGGCGCACCGGAACAGATAATGTATTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATACGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTGCGGTTACCGCACAAGGTTCTGGCTCAAGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCCTACCTGTTTGATCCTGATATTTACACTGATGGTAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCTGAAGAAGAAGAAGAACGCACTCGCCGCACCACTCCACTTGTTAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGATGGAAATCGCTTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA 1368 0.5307 MSTMDSSSIYGVSHRHFLTLFLLFLLPLHSHSAFSHNSSSSSQINSNSILVALLDSHYTELAELVEKALLLQKLEEAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPSDDLRHRTLSDHRLHLASKPSGHRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDAMAPGPSLAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNTVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEERTRRTTPLVKVAAPKPRRGKLMEIACSMFGSFGQVCQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01918 455 ProSiteProfiles FAS1/BIgH3 domain profile. 267 410 IPR000782 -
Gma19g01918 455 Gene3D FAS1 domain 49 186 IPR036378 -
Gma19g01918 455 SUPERFAMILY FAS1 domain 246 414 IPR036378 -
Gma19g01918 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 4 453 - -
Gma19g01918 455 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 453 IPR044654 -
Gma19g01918 455 SUPERFAMILY FAS1 domain 42 187 IPR036378 -
Gma19g01918 455 Pfam Fasciclin domain 57 186 IPR000782 -
Gma19g01918 455 Pfam Fasciclin domain 302 412 IPR000782 -
Gma19g01918 455 SMART fasc_3 308 413 IPR000782 -
Gma19g01918 455 SMART fasc_3 84 187 IPR000782 -
Gma19g01918 455 ProSiteProfiles FAS1/BIgH3 domain profile. 45 184 IPR000782 -
Gma19g01918 455 Gene3D FAS1 domain 286 413 IPR036378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01918 Gma-Chr19 48396594 48399421 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01918 - - gmx:100818575 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01918 19 48396594 48399421 Gma19g01918 19 48396594 48399421 ECH
Gma19g01918 19 48396594 48399421 Gma03g01878 03 44750559 44753315 GST