Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01878 ATGAGCGCCATGGATTTCTCTTCCATCTATGGTGTCTCACACAAACCCTTCCTCACCCTCTTCCTTCTCTTCCTTCTACCTCTCCATTCTCACTCTCACAACTCTACAACCTCAGCTCAGATTAACTCTAACTCCATCCTCGTCGCTCTTCTCGATTCCCATTACACCGAACTCGCCGAACTTGTTGAGAAAGCGCTTCTTCTCCAGCAGCTTGAAGACGCCGTCGGCAACCACAACATCACCATCTTCGCCCCCCGAAACCAAGCCCTTGAACGCGACTTAGACCCTGAATTCAAGCGTTTCTTGCTCGAGCCTCGCAATCTCAGGTCCCTCCAGACGCTCTTGATGTCTCACATTCTCCCCACGCGAATCGCCTCTCACCACTGGCCCGCCGCCGACCTCCTCCACCGCACTCTCTCCGACCACCACCTGCATTTGGCCTCCAAGCCCTCCGGCCAGAGAACCGTCGACTCCGCCGAGAtcctccgcgccgacgacgtcctccgccccgacggcgtcATCCACGGTATCGAGCGCCTCATCGTCCCCCGATCCGTCCAGGAGGATTTCAACCGCCGCCGCAACCTCGCCGCCATCTCCGCCGTCCTCCCCGAGGGAGCGCCGGAGGTCGATCCCCGCACTCACCGCCTCAAGAAGCCCGCTCCCGTCCCCGCTGGCGCGCCTCCGGTCCTCCCAATCTACGACGCCCTGGCACCGGGACCGTCCATCGCTCCTGCGCCGGCGCCGGGACCGGGAGGCCCGAAACACCACTTCAACGGCGAGCGTCAGGTGAAGGACTTCATCCACACACTCTTGCATTACGGAGGCTACAACGAAATGGCTGATATTCTGGTAAACCTAACGTCTCTGGCCACCGAAATGGGAAGGCTAGTTTCGGAAGGCTACGTTCTCACCGTTTTGGCCCCAAACGACGAAGCCATGGCGAAGTTAACGACGGATCAGTTGAGCGAACCCGGCGCACCGGAACAGATCATGTACTATCACATTATTCCTGAGTATCAAACCGAAGAGAGTATGTACAATGCGGTTAGAAGGTTCGGTAAGGTTAGCTACGATACACTTCGCTTACCGCACAAGGTTCTGGCGCAGGAGTCTGACGGCTCCGTTAAATTCGGTCACGGCGATTCCTCCGCTTACCTGTTCGACCCTGATATTTACACCGATGGAAGGATCTCCGTTCAGGGAATTGACGGCGTTCTTATCCCTCCCGAAGAAGAAGAAGAAGAACGCACTCGCCGCATCACTCCACTTGTCAAGGTTGCTGCTCCTAAACCAAGAAGAGGGAAGTTGGTGGAAGTCGCCTGTAGCATGTTTGGATCTTTTGGACAAGTCTGCCAATGA 1362 0.5477 MSAMDFSSIYGVSHKPFLTLFLLFLLPLHSHSHNSTTSAQINSNSILVALLDSHYTELAELVEKALLLQQLEDAVGNHNITIFAPRNQALERDLDPEFKRFLLEPRNLRSLQTLLMSHILPTRIASHHWPAADLLHRTLSDHHLHLASKPSGQRTVDSAEILRADDVLRPDGVIHGIERLIVPRSVQEDFNRRRNLAAISAVLPEGAPEVDPRTHRLKKPAPVPAGAPPVLPIYDALAPGPSIAPAPAPGPGGPKHHFNGERQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGAPEQIMYYHIIPEYQTEESMYNAVRRFGKVSYDTLRLPHKVLAQESDGSVKFGHGDSSAYLFDPDIYTDGRISVQGIDGVLIPPEEEEEERTRRITPLVKVAAPKPRRGKLVEVACSMFGSFGQVCQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01878 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 4 451 IPR044654 -
Gma03g01878 453 Pfam Fasciclin domain 54 183 IPR000782 -
Gma03g01878 453 Pfam Fasciclin domain 299 409 IPR000782 -
Gma03g01878 453 Gene3D FAS1 domain 283 410 IPR036378 -
Gma03g01878 453 ProSiteProfiles FAS1/BIgH3 domain profile. 264 407 IPR000782 -
Gma03g01878 453 SMART fasc_3 305 410 IPR000782 -
Gma03g01878 453 SMART fasc_3 81 184 IPR000782 -
Gma03g01878 453 SUPERFAMILY FAS1 domain 43 184 IPR036378 -
Gma03g01878 453 SUPERFAMILY FAS1 domain 243 411 IPR036378 -
Gma03g01878 453 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 17 4 451 - -
Gma03g01878 453 Gene3D FAS1 domain 46 183 IPR036378 -
Gma03g01878 453 ProSiteProfiles FAS1/BIgH3 domain profile. 42 181 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01878 Gma-Chr3 44750559 44753315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01878 - - gmx:100800956 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01878 03 44750559 44753315 Gma03g01878 03 44750559 44753315 ECH
Gma19g01918 19 48396594 48399421 Gma03g01878 03 44750559 44753315 GST