Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01873 ATGCAAGGGTGCTCAGACGCTCCACTCTCCAAGAGGTTAGAAGACAAAGTAGCACTAATCACCGGGGGAGCAAGTGGCATCGGCGAAGCCACTGCAAGGCTTTTCCTTCGCCACGGTGCCAAGGTCGTCATCGCCGACATCCAAGACAACCTCGGACACTCCCTTTGCCAAAACCTCAACTCCGGCAACAACATTTCCTATGTTCACTGTGATGTCACTAACGATAACGACGTTCAAATAGCCGTCAAAGCTGCCGTTTCACGCCACGGCAAGCTCGACATCCTCTTCAGTAACGCCGGAATCGGTGGCAATTCGGACTCCTCCATCATCGCCCTTGATCCTGCTGACTTGAAGAGGGTTTTTGAAGTCAACGTCTTCGGCGCTTTCTACGCCGCCAAACACGCCGCTGAAATAATGATTCCTAGAAAGATAGGGAGCATTGTGTTCACGTCTAGCGCTGTTTCGGTGACTCATCCGGGTTCGCCGCACCCATACACGGCGTCGAAGTACGCAGTGGTGGGTCTGATGAAGAACTTGTGCGTGGAACTGGGGAAGCATGGAATCAGAGTTAACTGCATTTCACCCTATGCTGTGGCCACTCCTCTGCTGACACGTGGAATGGGAATGGAGAAGGAGATGGTAGAGGAACTGTTTGCGGAGGCAGGGAACTTGAAGGGTGTGGTTCTCAAGGAAGAGGATTTGGCAGAAGCAGCTTTGTTTCTTGCTAGTGATGAGTCAAAGTACGTGAGTGGGGTCAACCTAGTTGTGGACGGAGGTTACAGTGTTAACAATACTGCTTCGGCTGAAGTAGCTTTAGGAAAGTTTTCTGCTAATTAA 837 0.5114 MQGCSDAPLSKRLEDKVALITGGASGIGEATARLFLRHGAKVVIADIQDNLGHSLCQNLNSGNNISYVHCDVTNDNDVQIAVKAAVSRHGKLDILFSNAGIGGNSDSSIIALDPADLKRVFEVNVFGAFYAAKHAAEIMIPRKIGSIVFTSSAVSVTHPGSPHPYTASKYAVVGLMKNLCVELGKHGIRVNCISPYAVATPLLTRGMGMEKEMVEELFAEAGNLKGVVLKEEDLAEAALFLASDESKYVSGVNLVVDGGYSVNNTASAEVALGKFSAN 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01873 278 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 7 267 - -
Gma19g01873 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 14 262 IPR036291 -
Gma19g01873 278 PRINTS Glucose/ribitol dehydrogenase family signature 90 101 IPR002347 -
Gma19g01873 278 PRINTS Glucose/ribitol dehydrogenase family signature 186 203 IPR002347 -
Gma19g01873 278 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Gma19g01873 278 PRINTS Glucose/ribitol dehydrogenase family signature 17 34 IPR002347 -
Gma19g01873 278 PRINTS Glucose/ribitol dehydrogenase family signature 165 184 IPR002347 -
Gma19g01873 278 PRINTS Glucose/ribitol dehydrogenase family signature 139 155 IPR002347 -
Gma19g01873 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 IPR002347 -
Gma19g01873 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 90 101 IPR002347 -
Gma19g01873 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 IPR002347 -
Gma19g01873 278 Pfam Enoyl-(Acyl carrier protein) reductase 22 261 - -
Gma19g01873 278 Gene3D - 5 274 - -
Gma19g01873 278 PANTHER SECOISOLARICIRESINOL DEHYDROGENASE-LIKE 7 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01873 Gma-Chr19 47939802 47941301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01873 13 262 Acyl Lipid Metabolism Gene Families AT1G62610 32.171 6.87e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01873 - - gmx:100803447 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01873 19 47939802 47941301 Gma19g01873 19 47939802 47941301 ECH
Gma19g01873 19 47939802 47941301 Gma03g01833 03 44334103 44335080 GST