Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01664 atgcctcgctatgatgataaatatggtaatacccgcctctatgttggacgcttgtcttcgaggacacgttcccgtgacctggagcgtgtcttcagcagatatggaagAATTCGAGGTGTAGATATGAAGAATGATTTTGCCTTTGTTGAATTTAGCGATCCTCGGGATGCTGATGATGCTAGATATAGCTTGGATGGTCGTGATGTTGAAGGAAGTCGTATCATTGTGGAATTTGCCAAGGGGGGTCCTCGTGGTTCCCGGGAAAACTTGGGTCGGGGTCTACCTCCTGGATCTggacgatgctttaactgtggcattgatggtcattgggcccgagattgcaaaGCTGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGCCGACATGGACGGAGTCTTTCACGTTCACCGGTCCGGTCACATTCTCCTCGTCGTGGCAGAAGCCGGGATCGAAGCTACAGCCGAGACCGCAACTACAGCCGATCGAGATCTCCAGTCAGAAGAGAACGAAGCCCAGTTTCTGAAGATAGATCACAGAGTCCTGAGCCCTCCAAGATAAGGAAGCATAGCACATCACCTGATCAAAGCAGCCCACGGAAGAGAGGTGACCCGGCTCCTGGCAATGATAGGTTGGCCACTCTGCAAGATGGGTCTGACTACAGTGATGGTCCTAGAGGGAAAAGTAGAAGCCCTGCTAGCCCTGCAAGGGACCATGATGAGGGCAACTATGATAGCCCTAAAGCTAGTGGGCGTAGCCACAGCCCCAGCAGGAGCCCTAGGGAAGATGACAGGAGCCCCATTGATGAAGATGATGACAACAACCGTCGCTCAGGGTCACCTTGA 894 0.4251 MPRYDDKYGNTRLYVGRLSSRTRSRDLERVFSRYGRIRGVDMKNDFAFVEFSDPRDADDARYSLDGRDVEGSRIIVEFAKGGPRGSRENLGRGLPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKSSRHGRSLSRSPVRSHSPRRGRSRDRSYSRDRNYSRSRSPVRRERSPVSEDRSQSPEPSKIRKHSTSPDQSSPRKRGDPAPGNDRLATLQDGSDYSDGPRGKSRSPASPARDHDEGNYDSPKASGRSHSPSRSPREDDRSPIDEDDDNNRRSGSP 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01664 297 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Gma19g01664 297 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Gma19g01664 297 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Gma19g01664 297 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Gma19g01664 297 SUPERFAMILY RNA-binding domain, RBD 7 91 IPR035979 GO:0003676
Gma19g01664 297 MobiDBLite consensus disorder prediction 134 297 - -
Gma19g01664 297 MobiDBLite consensus disorder prediction 248 263 - -
Gma19g01664 297 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Gma19g01664 297 MobiDBLite consensus disorder prediction 141 163 - -
Gma19g01664 297 Gene3D - 3 90 IPR012677 -
Gma19g01664 297 SUPERFAMILY Retrovirus zinc finger-like domains 94 139 IPR036875 GO:0003676|GO:0008270
Gma19g01664 297 MobiDBLite consensus disorder prediction 164 213 - -
Gma19g01664 297 MobiDBLite consensus disorder prediction 271 297 - -
Gma19g01664 297 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Gma19g01664 297 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Gma19g01664 297 Gene3D - 120 149 - -
Gma19g01664 297 Gene3D - 92 119 - -
Gma19g01664 297 SMART rrm1_1 12 77 IPR000504 GO:0003723
Gma19g01664 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Gma19g01664 297 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 276 - -
Gma19g01664 297 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01664 Gma-Chr19 46009864 46013347 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01664 K12896 - gmx:100789337 534.643
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01664 19 46009864 46013347 Gma19g01664 19 46009864 46013347 ECH
Gma19g01664 19 46009864 46013347 Gma03g01619 03 42375008 42378812 GST