Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01663 atgcctcgctatgatgataaatacggcaatacccgcctctatgtgggacacttgtcttcgaggactcgttcccgtgatctggagcgtgcctttagcagatatggaagAGTTCGAGGTGTGGATATGAAGAATGATTTCGCTTTTGTTGATTTTAGTGATCCTCGAGATGCTGATGATGCAAGATATAACCTGGATGGTCGGGATGTTGATGGAAGTCGGATTATTGTGGAATTTGCAAAAGGGGCTCCTCGTGGGTCCCGGGAATATTTGGGGCGAGGTCCTCCTCCTGGCTCTGGACGCTGCTTCaattgtggccttgatggccattgggcacgggattgcaaaGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGCACCAGGCGAGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCATCGCGGCAGAagccgtgatcgcagttacagccgagatcgcagctacagTCGATCACGATCCCCTGTCAGAAGAGAAGAAAGCCCTGTTCGGGAAGATAGGTCACAAAGCCCTGATCACAAAAATAGTCCTCAGCCCTCCAAGACAAGGAAGCATAGTCCATCACCTGACCGTAGCCCACAGAAAAGAGGTGACACATCTCCCGACAATGATAGGTTGAGTAGAAGCCCTGCAAGGGACCCTGAAGATAGGGGCTATGACAGCCCTAAAGTTAATGGTCGTAGTGGCAGCCCTAGCTGTAGCCCCAGGGATGATGACAGGAGCCCCATTGACGATGACAACAACCACCGCCACTCGCCAAGAGGCAGCGAGTCACCTTAA 864 0.4039 MPRYDDKYGNTRLYVGHLSSRTRSRDLERAFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVDGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSTRRGRSYSRSPVRSRSPHRGRSRDRSYSRDRSYSRSRSPVRREESPVREDRSQSPDHKNSPQPSKTRKHSPSPDRSPQKRGDTSPDNDRLSRSPARDPEDRGYDSPKVNGRSGSPSCSPRDDDRSPIDDDNNHRHSPRGSESP 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01663 287 MobiDBLite consensus disorder prediction 261 287 - -
Gma19g01663 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Gma19g01663 287 MobiDBLite consensus disorder prediction 134 287 - -
Gma19g01663 287 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Gma19g01663 287 SMART rrm1_1 12 77 IPR000504 GO:0003723
Gma19g01663 287 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Gma19g01663 287 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Gma19g01663 287 MobiDBLite consensus disorder prediction 165 200 - -
Gma19g01663 287 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Gma19g01663 287 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Gma19g01663 287 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Gma19g01663 287 MobiDBLite consensus disorder prediction 141 164 - -
Gma19g01663 287 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 6 282 - -
Gma19g01663 287 Gene3D - 120 162 - -
Gma19g01663 287 Gene3D - 91 119 - -
Gma19g01663 287 Gene3D - 3 89 IPR012677 -
Gma19g01663 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Gma19g01663 287 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 6 282 - -
Gma19g01663 287 MobiDBLite consensus disorder prediction 212 250 - -
Gma19g01663 287 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Gma19g01663 287 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01663 Gma-Chr19 46005958 46008401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01663 K12896 - gmx:100789862 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01663 19 46005958 46008401 Gma03g01618 03 42370557 42373320 GST