Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01618 ATGAAGAATGATTTCGCCTTTGTTGATTTTAGTGATCCTCGAGATGCTGATGATGCAAGATATAACTTGGATGGTCGGGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCAAAAGGGGCTCCTCGTGGGTCCCGGGAATATTTGGGGCGAGGTCCTCCTCCTGGCTCTGGAcgctgctttaattgtggccttgatggtcattgggcacgggattgcaaagctggggattggaagaataagtgttaccgctgtggggagagaggacatatagaaaggaactgcaagaacagccccaaaaaattgagCACAAGGCGAGGACGGAGTTATTCACGGTCACCAGTCAGGTCACATTCACCTCGTCGTGGCAGAagccgtgatcgcagttacagccgagatcgcagctacagTCGATCACGATCCCCTGTCAGAAGAGAAGAAAGCCCCGTTCGTGAAGATAGGTCACAAAGCCCTCAACACAAAAATAGTCCTCAGCCCTCCAAGACAAGGAAGCATAGTCCATCACCTGACCGTAGCCCACAGAGAAGAGGTGACACATCTCCTGACAATGATAGGTTGAGCAGAAGCCCTGCAAGGGACCGCGAAGATAGGGGCTATGACAGCCCTAAAGTTAATGGTCGTAGTGGCAGCCCTAGCCGTAGCCCCAGGGATGATGACAGGAGCCCCATTGATGATGAAGACAACCACCGCCACTCACCAAGAGGCAGCGAGTCACCTTAA 741 0.3954 MKNDFAFVDFSDPRDADDARYNLDGRDVDGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLSTRRGRSYSRSPVRSHSPRRGRSRDRSYSRDRSYSRSRSPVRREESPVREDRSQSPQHKNSPQPSKTRKHSPSPDRSPQRRGDTSPDNDRLSRSPARDREDRGYDSPKVNGRSGSPSRSPRDDDRSPIDDEDNHRHSPRGSESP 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01618 246 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 40 IPR000504 GO:0003723
Gma03g01618 246 MobiDBLite consensus disorder prediction 219 246 - -
Gma03g01618 246 Pfam Zinc knuckle 59 74 IPR001878 GO:0003676|GO:0008270
Gma03g01618 246 Pfam Zinc knuckle 80 97 IPR001878 GO:0003676|GO:0008270
Gma03g01618 246 MobiDBLite consensus disorder prediction 171 209 - -
Gma03g01618 246 SUPERFAMILY Retrovirus zinc finger-like domains 50 98 IPR036875 GO:0003676|GO:0008270
Gma03g01618 246 Gene3D - 50 78 - -
Gma03g01618 246 Gene3D - 79 112 - -
Gma03g01618 246 MobiDBLite consensus disorder prediction 124 158 - -
Gma03g01618 246 ProSiteProfiles Zinc finger CCHC-type profile. 81 97 IPR001878 GO:0003676|GO:0008270
Gma03g01618 246 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 241 - -
Gma03g01618 246 SUPERFAMILY RNA-binding domain, RBD 4 59 IPR035979 GO:0003676
Gma03g01618 246 MobiDBLite consensus disorder prediction 93 246 - -
Gma03g01618 246 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 1 241 - -
Gma03g01618 246 SMART c2hcfinal6 59 75 IPR001878 GO:0003676|GO:0008270
Gma03g01618 246 SMART c2hcfinal6 81 97 IPR001878 GO:0003676|GO:0008270
Gma03g01618 246 ProSiteProfiles Zinc finger CCHC-type profile. 59 74 IPR001878 GO:0003676|GO:0008270
Gma03g01618 246 Gene3D - 1 48 IPR012677 -
Gma03g01618 246 MobiDBLite consensus disorder prediction 100 123 - -
Gma03g01618 246 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 33 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01618 Gma-Chr3 42370557 42373320 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01618 K12896 - gmx:100812698 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01663 19 46005958 46008401 Gma03g01618 03 42370557 42373320 GST