Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01538 ATGGATTCGTGGAACGACGTCGCTTTAGTGTCCTCGGAGATGGAGAAGTTCCTGTGCGAGTTGTTGCTGGATTCCTCCCAGCCAATTTCTGAGCGCTTCAGAGCATTCTTCTCTCTCCGCAACCTCAAAGGCGCCTCCACTCGCAACGCTCTTATTCTCGCCACAAGGGATTCGTCGAATTTGTTGGCGCACGAAGCTGCATTTGCGTTGGGTCATATGCAGGAATTGGAAGCCATCCCTGCTTTGGCCTCAGTTCTCAATGATCTTTCTTTGCATCACATTGTTCGCCATGAGGCAGCTGAGGCTCTGGGTGCTATTGGTTCAGATGGTAATGTTCCTCTCCTGAAAAATAGTTTGGATTCAGATCCGGCCGAGGAGGTTCGAGAAACATGTGAATTGGCTCTTGAACGAATTCAGAATTTAAAAGATGCTGGTAATACTGATGTGTTGCTGCGAATGATGTATCTACTTTTATGTCTGTTGATCCAGCTGCACCAGCGACCCCTGGTTCTTCTGTTGATAAACCAAGACAAGTGCTTATTGATGAAGAAACAAGGGATGTATGAGCGCTATGCAGCTCTTTTTGCACTTCGTAATGACGGTGGAAATGATGCTGTTGCTGCTATTATTGATTCCTTGGGCTCAAAAAGTGCTCTACTGTGCCATGAGATGTGGAACCATGCTGCTTGCGTATTGAAGAAAGCCAATCAGATAAAATTAGTTGAAGATGTTGAAAACTTAGAGTCACTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATACATAGAGAGTGGCGGCGGTGGCGGCAGCAGCAGTGGCGGGGGCAGCGCGGCAAAGTCAGACTCCAAGACTGTCAAAGATACTAAATGTGGTATTGAAGTTTCACAAAATTCTCGTGCCACATGCAAGGATTGCGGTCAAAAAATTATCAAAGGAGAGGTTCGTATATCTACTAAGCAAGGTGGTCAAGGTGCTAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCATCGATCTGTCACCATCAATTGAAGTGGATAAGTTATCTGGATGGAACAATCTCTCATCTTCTGATCAATCAGCTGTCATTGACTTCGCTAAAAAGGGTGGTAGTGATACAAAAATTGAGACTGAGGAGGGTAAAGAATCCACACCACAACAAACTTCCAAAGGTGGCATAAAACGGGGGAAGGATGTTGATAGTGAGCGGAAATCAAAAGTTGCTAAGGCCAAGGGAGATGTGTCTGTGGGCAGCGCAATGTCAGTGAAATCAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAGACCCAAAGCAAAGAACTCTGGGATTTGAAGGACGATCTCAAAAAGCACGTTACAACAACAGAGTTGCGTGAAATGTTGGAAGCCAGTGGTCAAGATTCAACAGGATCAGAACTTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGATCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGGTGCCATGGATACATTTCCGAGTGGAGTAAATGTTCTTACTCTACCTGTGAACCAAAACGTATTGAAGGGAAGTGGAAAATCCCAAAAGAAACAAATAATCAGTACCTTAAAAAGTGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGGAAATCTGCTGAAAGTCAAATGATTGCTAGTCAGCATCAATCATCAAATAGTGGAAATTTACGAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGACTCTATTGCGGAATGGAAATGCAAAATTGATGGCATATGTGGGATGTTTCATGCAAAAGTAAATAAAGATACTAACTGCTTGGTGGTTGGTGGATCACTCAATTATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAATACCAATAGTCAGAGAGGACTATTTGATTGACTGCTTAGCAAGAAAGAAAAGGCTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGGCTTCTAGCATGGTCACCATTAAAGTGAAGGGACATAGTGCTGTTCACGAGGCTTCTGGCCTACAGGATTCCGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTATTAACAGCTACTACATTCTCCAGATAATCCAAGAAGATAAGGGGTCAGATTGCTATGTGTTTCGTAAATGGGGCCGAGTTGGAAATGACAAGATTGGAGGAACAAAGCTGGAGGAAATGTCAAAATCTGATGCAGTATGTGAATTCAAACGATTATTCTATGAGAAGACTGGAAACCCTTGGGACGCATGGGAACAAAAGACTATCCAGAAGCAACCTGGAAGATTTTTCCCATTGGATATTGACTATGGAGTTAACAAACAGGTCTCAAAAAAGGAAAAAAATGATGTCGACAGCAAACTACCTCCTCCATTAATAGAATTGATGAAGATGCTCTTTAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATCAATATGTCTGAAATGCCACTTGGGAAATTGAGCAAAAGCAACATCCAAAAGGGGTTTGAAGCATTGACAGAGATACAAAATCTGTTAAAAATTAGCAATCCCGATCCATCAGTCAAGGAAAGCTTACTTATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTGTTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGGTAGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATTGCCTCAAGATTAGTTGGATTTGATGCCAACAATGATGATTCCATTGATGATAATTATAAGAAGCTTCACTGTGATATATCTCCACTTCCTCATGATAGTGAAGAGTTTTGTTTAATTGAGAAGTTTCTCCATAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATTTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAGCCAAGGACTCAGAATTGCACCTCCTGAAGCCCCCGCGACTGGCTATATGTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCACTTGGAAATGTCTATGAGCTCAAGAAAGCGAAGTATATGGATAAACCTCCTGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCTCAGGAATCAGAATATGTAAAGTGGAGGGGCAATGTCACTGTTCCTTGTGGCAAACCAGTTCCATCAAATGTCAAGAGTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAATTCTTGTTGAAGGTGAGGTTTCATCACAAGAGATGA 3513 0.4216 MDSWNDVALVSSEMEKFLCELLLDSSQPISERFRAFFSLRNLKGASTRNALILATRDSSNLLAHEAAFALGHMQELEAIPALASVLNDLSLHHIVRHEAAEALGAIGSDGNVPLLKNSLDSDPAEEVRETCELALERIQNLKDAGNTDVLLRMMYLLLCLLIQLHQRPLVLLLINQDKCLLMKKQGMYERYAALFALRNDGGNDAVAAIIDSLGSKSALLCHEMWNHAACVLKKANQIKLVEDVENLESLRWEDQQKIRKYIESGGGGGSSSGGGSAAKSDSKTVKDTKCGIEVSQNSRATCKDCGQKIIKGEVRISTKQGGQGAKGLAWHHAKCLIDLSPSIEVDKLSGWNNLSSSDQSAVIDFAKKGGSDTKIETEEGKESTPQQTSKGGIKRGKDVDSERKSKVAKAKGDVSVGSAMSVKSGEACDLEKKMETQSKELWDLKDDLKKHVTTTELREMLEASGQDSTGSELDLRDRCADGMMFGALDLCPICSGFLRYSGGMYRCHGYISEWSKCSYSTCEPKRIEGKWKIPKETNNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQMIASQHQSSNSGNLRDLKVAICGLPNDSIAEWKCKIDGICGMFHAKVNKDTNCLVVGGSLNYEAEMRKARRMKIPIVREDYLIDCLARKKRLPFDMYKVEMIGEASSMVTIKVKGHSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNDKIGGTKLEEMSKSDAVCEFKRLFYEKTGNPWDAWEQKTIQKQPGRFFPLDIDYGVNKQVSKKEKNDVDSKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLKISNPDPSVKESLLINASNRFFTMIPSVHPHIIRDEDDFKSKVVKMLEALQDIEIASRLVGFDANNDDSIDDNYKKLHCDISPLPHDSEEFCLIEKFLHNTHAPTHTDWSLELEEVFSLEREGEFDKFAPYRDKLGNRMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRGNVTVPCGKPVPSNVKSSELMYNEYIVYNTAQVKMQFLLKVRFHHKR 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01538 1170 ProSiteProfiles PARP alpha-helical domain profile. 819 938 IPR004102 GO:0003950
Gma19g01538 1170 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 197 1164 - -
Gma19g01538 1170 PANTHER DNA LIGASE 197 1164 - -
Gma19g01538 1170 Pfam WGR domain 709 787 IPR008893 -
Gma19g01538 1170 ProSiteProfiles BRCT domain profile. 611 669 IPR001357 -
Gma19g01538 1170 MobiDBLite consensus disorder prediction 263 282 - -
Gma19g01538 1170 Pfam PADR1 (NUC008) domain 477 526 IPR012982 -
Gma19g01538 1170 SUPERFAMILY ARM repeat 94 220 IPR016024 -
Gma19g01538 1170 SMART E-Z type HEAT repeats 93 122 IPR004155 -
Gma19g01538 1170 SMART E-Z type HEAT repeats 60 89 IPR004155 -
Gma19g01538 1170 SMART E-Z type HEAT repeats 187 216 IPR004155 -
Gma19g01538 1170 SMART E-Z type HEAT repeats 29 58 IPR004155 -
Gma19g01538 1170 ProSiteProfiles SAP motif profile. 449 483 IPR003034 -
Gma19g01538 1170 ProSiteProfiles PARP catalytic domain profile. 945 1170 IPR012317 GO:0003950
Gma19g01538 1170 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 820 955 IPR036616 GO:0003950
Gma19g01538 1170 CDD parp_like 820 1165 - -
Gma19g01538 1170 SMART zf_PARP_3 293 367 IPR001510 GO:0003677|GO:0008270
Gma19g01538 1170 SMART zf_PARP_3 206 263 IPR001510 GO:0003677|GO:0008270
Gma19g01538 1170 Gene3D - 417 486 - -
Gma19g01538 1170 SUPERFAMILY WGR domain-like 677 802 IPR036930 -
Gma19g01538 1170 Coils Coil 124 144 - -
Gma19g01538 1170 Gene3D - 283 389 IPR036957 GO:0003677|GO:0008270
Gma19g01538 1170 Gene3D - 215 282 IPR036957 GO:0003677|GO:0008270
Gma19g01538 1170 Gene3D - 955 1170 - -
Gma19g01538 1170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 290 375 - -
Gma19g01538 1170 Pfam HEAT repeats 51 135 - -
Gma19g01538 1170 Pfam Poly(ADP-ribose) polymerase catalytic domain 965 1166 IPR012317 GO:0003950
Gma19g01538 1170 MobiDBLite consensus disorder prediction 393 410 - -
Gma19g01538 1170 Gene3D BRCT domain 574 676 IPR036420 -
Gma19g01538 1170 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 290 362 IPR001510 GO:0003677|GO:0008270
Gma19g01538 1170 MobiDBLite consensus disorder prediction 371 410 - -
Gma19g01538 1170 CDD WGR_PARP1_like 699 804 - -
Gma19g01538 1170 Gene3D - 487 547 IPR038650 -
Gma19g01538 1170 SUPERFAMILY BRCT domain 581 669 IPR036420 -
Gma19g01538 1170 SMART PADR1_2 475 528 IPR012982 -
Gma19g01538 1170 SUPERFAMILY ADP-ribosylation 954 1169 - -
Gma19g01538 1170 Gene3D - 8 152 IPR011989 -
Gma19g01538 1170 ProSiteProfiles WGR domain profile. 698 797 IPR008893 -
Gma19g01538 1170 SUPERFAMILY ARM repeat 27 138 IPR016024 -
Gma19g01538 1170 Pfam Poly(ADP-ribose) polymerase, regulatory domain 820 951 IPR004102 GO:0003950
Gma19g01538 1170 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 293 364 IPR001510 GO:0003677|GO:0008270
Gma19g01538 1170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 223 269 - -
Gma19g01538 1170 SMART BRCT_7 581 659 IPR001357 -
Gma19g01538 1170 Pfam BRCA1 C Terminus (BRCT) domain 583 656 IPR001357 -
Gma19g01538 1170 Gene3D - 809 954 IPR036616 GO:0003950
Gma19g01538 1170 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 225 266 IPR001510 GO:0003677|GO:0008270
Gma19g01538 1170 SMART WGR_cls 709 792 IPR008893 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01538 Gma-Chr19 44732448 44743941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01538 K24070 - gmx:100800968 1891.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01538 19 44732448 44743941 Gma03g01485 03 41074607 41083332 GST