Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01485 ATGTCTAACCCTCAAGACCAGAAACCATGGAAGGCGGAATACGCGAAGTCGGGAAGATCGTCATGCAGGACGTGCAAGAGCCCCATTGCCAGCGAAACGCTGCGTCTCGGAAAGATGGTTCAATCCACCAAATTCGATGGCCTCATGCCCATGTGGAACCATGCTGCTTGCATATTGAAGAAAGCCAATCAGATAAAATTACTTGAAGATGTTGAAAACTTAGAGTCACTTCGTTGGGAAGATCAGCAGAAGATCAGAAAATACATAGAGAGTggcggcggcggcggcggcggcggcggcggcAGTAGCAGCAGCGGCAGCGCGGCAAAGTCGGACTCCAAGACTGTCAAAGATACTAAATGTGGTATTGAAGTGTCACAAAATTCTCGTGCCACTTGCAAGGATTGCGGTCAAAAAATTATCAAAGGAGAGGTTCGTATATCTACTAAGCCTGGTGGTCAAGGTGCTAAAGGTTTGGCTTGGCACCATGCCAAGTGTCTCATGGAACTATCACCATCAATTGACGTGTATAAGTTATCTGGATGGAACAATCTCTCATCTTCTGATCAATCAGCTGTCAGTGACTTCGCTAAAAAGGGTGGTAGTGATACAAAAATTGAGACTGAGGAGGGTAAAGAATCCACACAACAACAAACTTCCAAAGGTGGGATAAAACGGGGGAAGGATGTTGATAGTGAGCGGAAATCAAAAGTTGCTAAGGCCAAGGGAGATGTGTCTGTGGGCAGCGCAATGTTAGTGAAATCAGGGGAAGCATGTGATCTGGAGAAGAAAATGGAGACCCAGAGCAAAGAACTCTGGGATTTGAAGGACGATCTCAAAAAGCACGTTACAACAACAGAGTTGCGTGAAATGCTGGAAGCCAATGGTCAAGATTCATCAGGATCAGAAATTGATTTACGTGACCGCTGTGCTGATGGAATGATGTTTGGAGCACTTGGTCTTTGCCCAATATGTTCTGGCTTTCTGCGTTACTCTGGAGGAATGTACCGGTGCCATGGCTACATTTCCGAGTGGAGTAAATGTTCTTACTCTACCTGTGAACCAAACCGTATTGAAGGGAAGTGGAAAATCCCAGAAGAAACAAATAATCAGTACCTTAAAAAATGGTTCAAATCTCAAAAAGGGAAGAAACCAGTTAGGATATTGCCTCTTCCATCACCAAGGAAATCTGCTGAAAGTCAAATGATTGCTAGTCAGCATCATCATTCATCAAATAGTGAAAATTTGCGAGATTTGAAAGTTGCTATCTGTGGATTACCTAATGACTCAATTGCAGAATGGAAACGCAAAATTGATGGCATAGGTGGGGTGTTTCATGCAAAAGTAAATAAGGATACTAACTGCTTGGTGGTTGTTGGATCACTCAATGATGAAGCTGAGATGCGGAAGGCAAGGAGGATGAAAAAACCAATAGTCAGAGAGGACTATTTGATTGACTGCATAGAAAGAAAGAAAAGACTTCCATTTGATATGTACAAGGTTGAAATGATTGGTGAGACTTCTAGCATGGTCACCATTAAAGTGAAGGGACGTAGTGCTGTTCATGAGGCTTCTGGCCTACAGGATTCCGGCCACATACTTGAGGAAGGGAAAAGCATATATAACACAACTTTGAATATGTCTGATTTGTCTACTGGTACTAACAGCTACTACATTCTCCAGATAATCGAGGAAGATAAGGGGTCCGATTGCTTTGTGTTTCGTAAATGGGGTCGAGTTGGAAATGACAAGATTGGAGGAACAAAGCTGGAGGAAATGTCAAAATCTGATGCAATATGTGAATTCAAACGATTATTCTATGAGAAGACTGGAAACCCTTGGGAGGCGTGGGAACAAAAGACTATCCAGAAGCAACCTGGAAGATTTTTTCCATTGGATATTGACTATGGAGTTAACAAACAGGTCCCAAAAAATAAAAAAAATGATGCTGACAGCAAATTACCTCCTCCATTAATAGAATTGATGAAGATGCTCTTCAATGTGGAAACATACAGAGCTGCCATGATGGAATTTGAGATTAATATGTCTGAAATGCCACTTGGGAAACTGAGCAAAAGCAATATCCAAAAGGGGTTTGAAGCATTGACAGAGATACAAAATCTGTTAAAAATTAGCAATCCTGATCCATCCGTCAAGGAAAGCTTACTCATTAATGCCAGCAATCGGTTCTTCACCATGATCCCTTCTATTCATCCACATATTATTAGGGATGAGGATGACTTTAAGTCCAAGGTGGTGAAAATGTTAGAAGCCCTTCAAGACATTGAAATAGCCTCAAGATTAGTTGGATTTGATGCTAACAATGATGATTCCATTGATGATAATTATAAGAAGCTTCACTGTGATATATCTCCACTTCCTCATGATAGTGAAGAGTTTTGCTTAATTGAAAAGTTTCTCCAGAATACTCATGCCCCCACACATACGGACTGGAGTCTTGAGCTAGAAGAAGTTTTTTCACTTGAAAGGGAAGGTGAATCTGATAAGTTTGCTCCTTACAGGGATAAACTTGGAAACAGAATGCTCCTATGGCATGGTTCTAGGTTGACAAACTTTGTGGGCATTCTTAACCAAGGACTCAGAATTGCACCTCCTGAAGCCCCGGCTACTGGCTATATGTTTGGCAAAGGGGTTTACTTTGCTGACCTGGTCAGCAAAAGTGCTCAGTATTGCTTCACTGATAAGAAAAATCCTGTTGGTCTAATGCTTTTGAGTGAAGTTGCGCTTGGAAATGTCTATGAGCTCAAGAAAGCTAAGTATATGGATAAACCTCCCGAAGGAAAGCACTCTACTAAAGGACTGGGCAAGAAAATGCCACAGGAATCGGAATATGTAAAGTGGAGGGGCAATGTCACTGTTCCTTGTGGCAAACCAGTGCCATCAAATGTCAAGAGTTCTGAGCTCATGTACAATGAGTATATTGTTTATAATACTGCTCAAGTTAAGATGCAATTCTTATTGAAGGTGAGGTTTCATCACAAGAGATGA 3009 0.4104 MSNPQDQKPWKAEYAKSGRSSCRTCKSPIASETLRLGKMVQSTKFDGLMPMWNHAACILKKANQIKLLEDVENLESLRWEDQQKIRKYIESGGGGGGGGGGSSSSGSAAKSDSKTVKDTKCGIEVSQNSRATCKDCGQKIIKGEVRISTKPGGQGAKGLAWHHAKCLMELSPSIDVYKLSGWNNLSSSDQSAVSDFAKKGGSDTKIETEEGKESTQQQTSKGGIKRGKDVDSERKSKVAKAKGDVSVGSAMLVKSGEACDLEKKMETQSKELWDLKDDLKKHVTTTELREMLEANGQDSSGSEIDLRDRCADGMMFGALGLCPICSGFLRYSGGMYRCHGYISEWSKCSYSTCEPNRIEGKWKIPEETNNQYLKKWFKSQKGKKPVRILPLPSPRKSAESQMIASQHHHSSNSENLRDLKVAICGLPNDSIAEWKRKIDGIGGVFHAKVNKDTNCLVVVGSLNDEAEMRKARRMKKPIVREDYLIDCIERKKRLPFDMYKVEMIGETSSMVTIKVKGRSAVHEASGLQDSGHILEEGKSIYNTTLNMSDLSTGTNSYYILQIIEEDKGSDCFVFRKWGRVGNDKIGGTKLEEMSKSDAICEFKRLFYEKTGNPWEAWEQKTIQKQPGRFFPLDIDYGVNKQVPKNKKNDADSKLPPPLIELMKMLFNVETYRAAMMEFEINMSEMPLGKLSKSNIQKGFEALTEIQNLLKISNPDPSVKESLLINASNRFFTMIPSIHPHIIRDEDDFKSKVVKMLEALQDIEIASRLVGFDANNDDSIDDNYKKLHCDISPLPHDSEEFCLIEKFLQNTHAPTHTDWSLELEEVFSLEREGESDKFAPYRDKLGNRMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCFTDKKNPVGLMLLSEVALGNVYELKKAKYMDKPPEGKHSTKGLGKKMPQESEYVKWRGNVTVPCGKPVPSNVKSSELMYNEYIVYNTAQVKMQFLLKVRFHHKR 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01485 1002 Pfam PADR1 (NUC008) domain 308 357 IPR012982 -
Gma03g01485 1002 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 13 89 IPR001510 GO:0003677|GO:0008270
Gma03g01485 1002 Pfam Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region 124 195 IPR001510 GO:0003677|GO:0008270
Gma03g01485 1002 Gene3D BRCT domain 395 503 IPR036420 -
Gma03g01485 1002 ProSiteProfiles PARP alpha-helical domain profile. 651 770 IPR004102 GO:0003950
Gma03g01485 1002 SUPERFAMILY WGR domain-like 508 634 IPR036930 -
Gma03g01485 1002 Pfam Poly(ADP-ribose) polymerase catalytic domain 797 998 IPR012317 GO:0003950
Gma03g01485 1002 Gene3D - 642 786 IPR036616 GO:0003950
Gma03g01485 1002 Gene3D - 318 378 IPR038650 -
Gma03g01485 1002 ProSiteProfiles WGR domain profile. 530 629 IPR008893 -
Gma03g01485 1002 SMART PADR1_2 306 359 IPR012982 -
Gma03g01485 1002 MobiDBLite consensus disorder prediction 389 413 - -
Gma03g01485 1002 MobiDBLite consensus disorder prediction 188 239 - -
Gma03g01485 1002 MobiDBLite consensus disorder prediction 200 214 - -
Gma03g01485 1002 ProSiteProfiles PARP catalytic domain profile. 777 1002 IPR012317 GO:0003950
Gma03g01485 1002 MobiDBLite consensus disorder prediction 98 112 - -
Gma03g01485 1002 SUPERFAMILY ADP-ribosylation 786 1001 - -
Gma03g01485 1002 CDD parp_like 652 997 - -
Gma03g01485 1002 ProSiteProfiles BRCT domain profile. 411 501 IPR001357 -
Gma03g01485 1002 Gene3D - 787 1002 - -
Gma03g01485 1002 ProSiteProfiles SAP motif profile. 280 314 IPR003034 -
Gma03g01485 1002 PANTHER DNA LIGASE 50 996 - -
Gma03g01485 1002 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 652 787 IPR036616 GO:0003950
Gma03g01485 1002 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 121 201 IPR001510 GO:0003677|GO:0008270
Gma03g01485 1002 MobiDBLite consensus disorder prediction 224 239 - -
Gma03g01485 1002 CDD WGR_PARP1_like 531 636 - -
Gma03g01485 1002 Pfam WGR domain 541 619 IPR008893 -
Gma03g01485 1002 SUPERFAMILY BRCT domain 413 501 IPR036420 -
Gma03g01485 1002 SMART zf_PARP_3 13 90 IPR001510 GO:0003677|GO:0008270
Gma03g01485 1002 SMART zf_PARP_3 124 198 IPR001510 GO:0003677|GO:0008270
Gma03g01485 1002 Pfam BRCA1 C Terminus (BRCT) domain 413 488 IPR001357 -
Gma03g01485 1002 SMART BRCT_7 413 491 IPR001357 -
Gma03g01485 1002 Gene3D - 111 222 IPR036957 GO:0003677|GO:0008270
Gma03g01485 1002 Gene3D - 2 102 IPR036957 GO:0003677|GO:0008270
Gma03g01485 1002 SMART WGR_cls 541 624 IPR008893 -
Gma03g01485 1002 Pfam Poly(ADP-ribose) polymerase, regulatory domain 652 783 IPR004102 GO:0003950
Gma03g01485 1002 PIRSF NAD_ADPRT 3 1002 IPR008288 GO:0003677|GO:0003950|GO:0005634|GO:0008270|GO:0051287
Gma03g01485 1002 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 7 94 - -
Gma03g01485 1002 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 121 207 - -
Gma03g01485 1002 Gene3D - 249 317 - -
Gma03g01485 1002 ProSiteProfiles Poly(ADP-ribose) polymerase zinc finger domain profile. 10 93 IPR001510 GO:0003677|GO:0008270
Gma03g01485 1002 PANTHER POLY [ADP-RIBOSE] POLYMERASE 1 50 996 - -
Gma03g01485 1002 MobiDBLite consensus disorder prediction 88 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01485 Gma-Chr3 41074607 41083332 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01485 K24070 - gmx:100815900 1987.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01538 19 44732448 44743941 Gma03g01485 03 41074607 41083332 GST