Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01242 ATGTGGGCTCTTCGTCGAGCTTCGATTCCTCTCAGGACCCGAGGGTTTAATGTGAGAGCTTCCTGTGTCAAATTAGCGGGAACTAGTTCTGTTGAAGAAGAGGATGTTATCAATGAATCTCATGGAATAACGTATGGTGGATTTTTATCGCCGAATATGCGATTCCATTCGGTACATAATGCCTCCCTGAATTTTACTGTGGGAAAACGTGCGCTTTCTTCAAGTAGCACGAAAGAGGAGGATGATTTGGAGGATGGGTTTTCCGAGCTGGAGATGCCTGCCGGCAGTGGATATGAAAGTGAGGATCTGTTAACTTCCGATGATGGCGACCTATCGGATGATGGTCAGAAGGAGGATGTTGAGGAGCCACCACACAATGAGGTTGATGAGGCGGCCAAGGAGAAAGGAAACCCGCGTCGTGGAAGGGTTGAATCAAAGCTATTCAATGAGATCATGAATGCACAGGGTATCTCTCTTCATTCGGTTCTGGAAAAATGGTTAGAAAAAGGGAATGAGCTTACCAGAGAGGAGGTTTCGCTTGCCATGCTTTATCTTCGAAAGCGTAAGCTGTTTGGGAGAGCTTTGCTGCTCTCAGAATGGCTCGAGTCAAAAAAGGAGTTTGAGTTTATTGAAAGAGATTATGCAAGTCGGCTTGATTTAATTGCCAAATTGCGTGGCTTACATAAGGCAGAGGTTTACATTGAGACTATTCCAGAATCTTGTAGCAGAGAGATAATGTACCGGACTTTATTGGCTAACTGTGTCAGTCAGAATAATGTGAAGAAAGCAGAGGAAGTTTTTAGTAAAATGAAGGACTTGGATTTTCCTATTACAGTATTTACTTGCAATCAGTTGCTATTTCTGTATAAGAGGAATGACAGGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAATGAGAATATCAACCCTTCTTCTCATACTTACTCGATCTTAATAGACACAAAAGGCCAGTCCAAAGATATTGATGGAATGGATCAAATTGTTGATAGGATGAAGGCTCAAGGCATTGAACCAGACATCAACACGCAGGCTGTTTTGATTAGGCATTACATCTCTTCTGGGCTTCAAGATAAAGCTGAAACTTTATTAAAGGAGATGGAAGGGGAAAACTTAAAACAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCAAACCTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGAAAGTCTGTGAGACAAACCCTCGGTATGATGAGTGTCTAGGAGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGATGAAGCAGAGAAAGTTTTTGAGATTATGGTAAAGAAATGGAAGCTTTCTTCCAAGACCTGTTCCATACTGCTGAAGGTTTATGCAAATAATAAGATGCTAATGAAGGGTAAGGATCTTATTAAGCGAATGGGAGATGGTGGGTGCCGAATTGGCCCATTGACCTGGGATGCAATAGTGAAACTTTATGTCCAAGCTGGGGAAGTAGAGAAGGCGGATTCTGTTCTTCAGAAGGCAGCCCAGCAGAGCCAGATGAAGCCAATATTTTCTACCTACCTAACTATTTTGGAACAGTATGCTAATAGGGGTGACATCCATAACTCGGAGAAGATTTTTCTTAGAATGAAACAAGCTGATTATCCATCTAAAGCAAAGATGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGGTTCCAGCATATGGGATTAGGGACAGGTTGAGAGCTGATAGTATATATCCCAATAGAAATTTGGCAAACCAGTTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTCTCCGATTTGCTTGATTGA 1833 0.4163 MWALRRASIPLRTRGFNVRASCVKLAGTSSVEEEDVINESHGITYGGFLSPNMRFHSVHNASLNFTVGKRALSSSSTKEEDDLEDGFSELEMPAGSGYESEDLLTSDDGDLSDDGQKEDVEEPPHNEVDEAAKEKGNPRRGRVESKLFNEIMNAQGISLHSVLEKWLEKGNELTREEVSLAMLYLRKRKLFGRALLLSEWLESKKEFEFIERDYASRLDLIAKLRGLHKAEVYIETIPESCSREIMYRTLLANCVSQNNVKKAEEVFSKMKDLDFPITVFTCNQLLFLYKRNDRKKIADVLLLMENENINPSSHTYSILIDTKGQSKDIDGMDQIVDRMKAQGIEPDINTQAVLIRHYISSGLQDKAETLLKEMEGENLKQNRWLCRILLPLYANLGKVDEVGRIWKVCETNPRYDECLGAIEAWGKLNKIDEAEKVFEIMVKKWKLSSKTCSILLKVYANNKMLMKGKDLIKRMGDGGCRIGPLTWDAIVKLYVQAGEVEKADSVLQKAAQQSQMKPIFSTYLTILEQYANRGDIHNSEKIFLRMKQADYPSKAKMYQVLMNAYINAKVPAYGIRDRLRADSIYPNRNLANQLVQVDGFRKNPVSDLLD 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01242 610 MobiDBLite consensus disorder prediction 118 140 - -
Gma19g01242 610 MobiDBLite consensus disorder prediction 103 117 - -
Gma19g01242 610 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Gma19g01242 610 Gene3D Tetratricopeptide repeat domain 418 604 IPR011990 GO:0005515
Gma19g01242 610 Gene3D Tetratricopeptide repeat domain 242 417 IPR011990 GO:0005515
Gma19g01242 610 MobiDBLite consensus disorder prediction 70 140 - -
Gma19g01242 610 Pfam PPR repeat 521 549 IPR002885 -
Gma19g01242 610 Pfam PPR repeat 422 444 IPR002885 -
Gma19g01242 610 Pfam PPR repeat 486 509 IPR002885 -
Gma19g01242 610 Pfam PPR repeat 451 480 IPR002885 -
Gma19g01242 610 Pfam Pentacotripeptide-repeat region of PRORP 246 404 IPR033443 -
Gma19g01242 610 PANTHER OS12G0527900 PROTEIN 53 610 - -
Gma19g01242 610 PANTHER OS01G0280400 PROTEIN 53 610 - -
Gma19g01242 610 TIGRFAM PPR: pentatricopeptide repeat domain 246 277 IPR002885 -
Gma19g01242 610 TIGRFAM PPR: pentatricopeptide repeat domain 314 348 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01242 Gma-Chr19 41318705 41322803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01242 151 549 EF-hand Containing Proteins AT1G02150 25.000 2.20e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01242 - - gmx:100500196 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01242 19 41318705 41322803 Gma19g01242 19 41318705 41322803 ECH
Gma19g01242 19 41318705 41322803 Gma03g01186 03 37521710 37530478 GST