Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g01186 ATGGATCAAGGAGAGCTTGCACGAGTTTTTCAAATGTTTGATCGAAATGGGGATGGCCGTATCACGCGAAAAGAGCTTAGTGACTCCTTAAAAAACCTTGGAATCACCATCTTGGAGCAAGATTTGAGCCTAATGATCGAGAAGATCGACGTAAATGGAGATGGGTTCGTTGACATGGACGAGTTTGGCGAATTATACCAAACAATAATGGACGAGAAAGACGAGGAGGAGGATATGAAGGAGGCATTCAATGTGTTTGATCAAAATGGAGATGGGTTCATCACGGGAGAAGAATTGAGCGCGGTGTTGTGTTCTTTAGGCCTAAAGCATGGGAAAACCATAGAGGATTGCAAAAGCATGATCAAGAAAGTGGACGTGGATGGTGATGGAATGGTTAACTACAGAGAGTTTAAGCAAATGATGAAGGCTGGGGGCGTAATCTCCCATGTGGGCTCTTCGTCGAGCTTCGGTTCCTCTCACGACCCGAGGGTCAAATTAGCGGGAACTAGTTCTGTTGAAGAAGAGAGTGTTGTTATCTATGAATCTAATGGAATGACGTATGGCGGATTTTTGTCGCCAAATATGCGATACCATTCGGGACATAACGCTTCGCTTAATTTTACTGTCGGGAAACGCGCGCTTTCTTCGAGCAGGACAGCTTTGCTGCTCTCAGAATGGCTCGAGTCAAAAAAGGAGTTTGAATTTATTGAAAGAGATTATGCAAGTCGGCTTGATTTAATTGCCAAATTGCGTGGCTTACATAAGGCAGAGGTTTACATCGAGACTATTCCAGAATCTTGTAGTAGAGAGATAATGTACCGGACTTTATTGGCTAACTGTGTCAGTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTTAGTAAAATGAAGGACTTGGATTTGCCTATTACAGTATTTACTTGCAATGAGTTGCTATTTCTGTATAAGAGGAATGACAAGAAGAAAATAGCTGATTTGTTATTGTTGATGGAAAATGAGAAGATCAAACCTTCTCGTCATTCTTATTCAATCTTAATAGACACAAAAGGCCAGTCCAAAGATATTGGTGGAATGGATCAAATTGTTGATAGAATGAAGGCTCAAGGCATTGAACCAGACATCAACACACAGGCTGTTTTGGCTAGGCATTACATCTCAGCTGGGCTTCAAGATAAAGTTGAAACTTTGTTGAAGCAGATGGAAGGTGAAAACTTAAAACAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCAAACCTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGAAGGTCTGTGAGACAAACCCTCGGTATGATGAGTGTCTGGGGGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGATGAAGCAGAGAAAGTTTTTGAGATGATGGTAAAGAAATGGAAGCTTTCTTCCAAGACCTGTTCCATACTGCTGAAGGTTTATGCAAATAATGAGATGCTAATGAAGGGTAAGGATCTTATGAAGCGAATCGGAGATGGTGGGTGCCGAATAGGCCCATTGACCTGGGACACAATAGTGAAACTTTATGTCCAAACTGGGGAAGTAGAGAAGGCAGATTCTGTTCTTCAGAAGGCAGCCCAGCAGAGCCAGATGAAGCCAATGTTTTCTACCTACCTAACTATTTTGGAGCAGTATGCTAAGAGGGGTGACATCCATAACTCGGAGAAGATTTTCCTTAGAATGAAACAAGCTGATTATACATCTAAAGCAAAGATGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGGTTCCAGCCTATGGGATTAGGGACAGGTTGAAAGCTGATAGCATATATCCCAATAGAAATTTGGTAAACCAATTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTCTGCGATTTGCTTGATTGA 1911 0.416 MDQGELARVFQMFDRNGDGRITRKELSDSLKNLGITILEQDLSLMIEKIDVNGDGFVDMDEFGELYQTIMDEKDEEEDMKEAFNVFDQNGDGFITGEELSAVLCSLGLKHGKTIEDCKSMIKKVDVDGDGMVNYREFKQMMKAGGVISHVGSSSSFGSSHDPRVKLAGTSSVEEESVVIYESNGMTYGGFLSPNMRYHSGHNASLNFTVGKRALSSSRTALLLSEWLESKKEFEFIERDYASRLDLIAKLRGLHKAEVYIETIPESCSREIMYRTLLANCVSQNNVKKAEEVFSKMKDLDLPITVFTCNELLFLYKRNDKKKIADLLLLMENEKIKPSRHSYSILIDTKGQSKDIGGMDQIVDRMKAQGIEPDINTQAVLARHYISAGLQDKVETLLKQMEGENLKQNRWLCRILLPLYANLGKVDEVGRIWKVCETNPRYDECLGAIEAWGKLNKIDEAEKVFEMMVKKWKLSSKTCSILLKVYANNEMLMKGKDLMKRIGDGGCRIGPLTWDTIVKLYVQTGEVEKADSVLQKAAQQSQMKPMFSTYLTILEQYAKRGDIHNSEKIFLRMKQADYTSKAKMYQVLMNAYINAKVPAYGIRDRLKADSIYPNRNLVNQLVQVDGFRKNPVCDLLD 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g01186 636 ProSitePatterns EF-hand calcium-binding domain. 87 99 IPR018247 -
Gma03g01186 636 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Gma03g01186 636 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Gma03g01186 636 Gene3D Tetratricopeptide repeat domain 445 630 IPR011990 GO:0005515
Gma03g01186 636 Gene3D Tetratricopeptide repeat domain 268 444 IPR011990 GO:0005515
Gma03g01186 636 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Gma03g01186 636 TIGRFAM PPR: pentatricopeptide repeat domain 340 374 IPR002885 -
Gma03g01186 636 TIGRFAM PPR: pentatricopeptide repeat domain 272 302 IPR002885 -
Gma03g01186 636 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Gma03g01186 636 Pfam PPR repeat 448 470 IPR002885 -
Gma03g01186 636 Pfam PPR repeat 512 535 IPR002885 -
Gma03g01186 636 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Gma03g01186 636 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Gma03g01186 636 Gene3D - 2 147 - -
Gma03g01186 636 PANTHER OS12G0527900 PROTEIN 219 636 - -
Gma03g01186 636 SMART efh_1 116 144 IPR002048 GO:0005509
Gma03g01186 636 SMART efh_1 5 33 IPR002048 GO:0005509
Gma03g01186 636 SMART efh_1 41 69 IPR002048 GO:0005509
Gma03g01186 636 SMART efh_1 78 106 IPR002048 GO:0005509
Gma03g01186 636 PANTHER OS01G0280400 PROTEIN 219 636 - -
Gma03g01186 636 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Gma03g01186 636 Pfam EF-hand domain pair 6 67 IPR002048 GO:0005509
Gma03g01186 636 Pfam EF-hand domain pair 76 142 IPR002048 GO:0005509
Gma03g01186 636 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Gma03g01186 636 CDD EFh 82 142 IPR002048 GO:0005509
Gma03g01186 636 Pfam Pentatricopeptide repeat domain 361 408 IPR002885 -
Gma03g01186 636 Pfam Pentatricopeptide repeat domain 296 350 IPR002885 -
Gma03g01186 636 Pfam Pentatricopeptide repeat domain 537 592 IPR002885 -
Gma03g01186 636 CDD EFh 5 62 IPR002048 GO:0005509
Gma03g01186 636 SUPERFAMILY EF-hand 5 141 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g01186 Gma-Chr3 37521710 37530478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma03g01186 1 153 EF-hand Containing Proteins AT3G07490 73.856 8.86e-65 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g01186 - - gmx:100500196 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g01186 03 37521710 37530478 Gma03g01186 03 37521710 37530478 ECH
Gma19g01242 19 41318705 41322803 Gma03g01186 03 37521710 37530478 GST