Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01058 ATGAGTGCTACTTTCAATTTCTTTAAGCCTTTTAGCTCTGAAACTTTTTTAGCACCACCAAAATTTGGTTTCTCAGTCAAGCATTTTTCTACTTCTTCAACCAGAAACCTTGGGGCTTCAACTGATGCCCCTGCACATGAGGCCTTGAGtcatgatgatgatgatgataatgatgatggggatgatgataatgatgatggggatgatgatgatcatgaCAAGAACAAAGATACCCATTGTAGTCAGTTACGTTTTAGGGATGATAGACTTGCCCAAGATGTTAAAACCATTTTGGATATAATGCATGAAATGGGTTCTGGACCATCTCAAACTAAGCAGAAGCTTGAGCATTGCAGTGTTGTGCTATCAGCAAAGCTGGTTGTGGAGGTCCTTTTGAGAACTCGCAATGATTGGGAGGCGGCTTTCACTTTTTTCTTGTGGGCTGGCAAGCAACCGGGGTATGCTCATTCGATTCGCGAGTACCATTCTATGATCTCCATCCTTGGCAAAATGAGGAAGTTTGATACTGCTTGGAACTTAATTGAGGAAATGAGAAGAGGTAGAACTGGTCCATCTCTTGTCACTCCCCAAACACTGTTGATTATGATCAGGAAATACTGTGCTGTACATGATGTTGCAAGGGCTATCAATACTTTCTATGCTTATAAACAGTTTAACTTTCAAGTTGGGCTAGAGGAATTTCATAGCCTTCTTTCTGCCCTTTGTCGGTATAAGAATGTGCAAGATGCTGAGCACTTACTGTTCTGCAACAAAAATTTATTCCCATTAGATACCAAAAGCTTTAACATCATTCTGAATGGATGGTGTAATTTGATTGTAAGCACTAGTCATGCAGAAAGAATATGGCATGAGATGAGCAAGCGAAGAATCCAACACGATGTTGTCTCCTATGGAAGTATCATATCTTGCTATTCAAAATCTTCTAAACTTTACAAGGTGCTCAGGAAGTTTGATGAAATGAAGAAAAGGAAGATCACTCCAGATAGGAAGGTTTATAATGCAGTCATTTATGCCCTAGCAAAGGGCAGGCTTGTGAAAGAAGCTGTCAATCTCATTGGAACATTGGAAGACAATGATGTTACTCCAAATGTTGTAACTTACAACTCCCTGATCAAACCTCTCTGCAAAGCCGGCAAAGTTGATGAAGCTAAACAACTTTTTTATGAGATTTTGAAACGGCATCTGTCCCCAACAATTCAAACTTTTCATGCTTTCTTCCGTATATTACGGACCAAGGAAGAAGTATTTGAGCTCTTGGACAAAATGAAAGAGCTGGGATGCTACCCAACCATTGAGACTTATATAATGTTGATGAGAAAGTTTTGCCGCTGGCGCCAGCTTGATGATGTATTTAAGATGTGGGATGCAATGAGGGAAGATGGGATAGGCCATGATCGTAGTTCATATATAGTGCTGATTCATGGGCTGTTTCTAAATGGAAAGCTGGAGGAAGCGCACACATATTATGCAGAGATGCAAGAGAAAGGCTTCCTACCTGAACCGAAGACAGAAGAAATGCTTCAAGCATGGGTTTCCGGGAAACAGGCAACAGAGGGTCAGGAGACAAATTTAGAACCTAATCAACTGGAAAATGATACTCTTAAAAAGAAAGTAAAGGCCATACCGAGTAAATTTGACAGGGAAAAAGCCTTTCTTCGTGAACCTGAGACCAGAAGAGTAACAAGAGAACGGGGTTTTTCTTTCTGGGAGCAGTAA 1737 0.3915 MSATFNFFKPFSSETFLAPPKFGFSVKHFSTSSTRNLGASTDAPAHEALSHDDDDDNDDGDDDNDDGDDDDHDKNKDTHCSQLRFRDDRLAQDVKTILDIMHEMGSGPSQTKQKLEHCSVVLSAKLVVEVLLRTRNDWEAAFTFFLWAGKQPGYAHSIREYHSMISILGKMRKFDTAWNLIEEMRRGRTGPSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKQFNFQVGLEEFHSLLSALCRYKNVQDAEHLLFCNKNLFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMSKRRIQHDVVSYGSIISCYSKSSKLYKVLRKFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTLEDNDVTPNVVTYNSLIKPLCKAGKVDEAKQLFYEILKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELGCYPTIETYIMLMRKFCRWRQLDDVFKMWDAMREDGIGHDRSSYIVLIHGLFLNGKLEEAHTYYAEMQEKGFLPEPKTEEMLQAWVSGKQATEGQETNLEPNQLENDTLKKKVKAIPSKFDREKAFLREPETRRVTRERGFSFWEQ 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01058 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Gma19g01058 578 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Gma19g01058 578 TIGRFAM PPR: pentatricopeptide repeat domain 161 187 IPR002885 -
Gma19g01058 578 TIGRFAM PPR: pentatricopeptide repeat domain 440 469 IPR002885 -
Gma19g01058 578 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Gma19g01058 578 TIGRFAM PPR: pentatricopeptide repeat domain 338 371 IPR002885 -
Gma19g01058 578 TIGRFAM PPR: pentatricopeptide repeat domain 475 506 IPR002885 -
Gma19g01058 578 Pfam PPR repeat 440 469 IPR002885 -
Gma19g01058 578 Pfam PPR repeat 475 504 IPR002885 -
Gma19g01058 578 Pfam PPR repeat 161 186 IPR002885 -
Gma19g01058 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 370 404 IPR002885 -
Gma19g01058 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 437 471 IPR002885 -
Gma19g01058 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Gma19g01058 578 PANTHER OS01G0816000 PROTEIN 48 568 - -
Gma19g01058 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 472 506 IPR002885 -
Gma19g01058 578 Gene3D Tetratricopeptide repeat domain 419 565 IPR011990 GO:0005515
Gma19g01058 578 Pfam PPR repeat 366 394 IPR002885 -
Gma19g01058 578 MobiDBLite consensus disorder prediction 33 78 - -
Gma19g01058 578 Pfam Pentatricopeptide repeat domain 287 345 IPR002885 -
Gma19g01058 578 Gene3D Tetratricopeptide repeat domain 91 256 IPR011990 GO:0005515
Gma19g01058 578 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Gma19g01058 578 MobiDBLite consensus disorder prediction 52 70 - -
Gma19g01058 578 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 48 568 - -
Gma19g01058 578 Gene3D Tetratricopeptide repeat domain 258 418 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01058 Gma-Chr19 38514197 38515933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g01058 113 510 Glycosyltransferase AT1G05670 23.951 5.45e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01058 - - gmx:100812155 1117.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01058 19 38514197 38515933 Gma16g00393 16 4148044 4152626 GST