Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00393 ATGGGTGCTACTTTCAATTTCTTTGACCCTTTTAAGTCTGAAACTTTTTTAGCACCACAAAAGTTTGGTTTCTCAGTCAAGCCTTTTTCTACTTCATCTTCAACCAGAAGCCTTGGGGCTTCAACTGATGCCCCTGCACATGGGGCCTTGGGtgacgatgatgatgatggggatggggatggggatgaggatgatgatgatcacgacaacaataaagataagaatgatACCCATTGTAGTCAGTTACATTTAAGGGATGATGGTCTTGCCAAAGATGTTAAAACCATTTTGGCTATAATGCATGAAGTGGGTTCTGGACCATCTCAAATTAAGCAGAAGCTTGAGCATTGCAGTATTGTTCTATCACCCGAGCTGGTTGTGGAGGTCCTTTCGAGAACTCGTAATGATTGGGAAGCAGCTTTCACTTTTTTCTTGTGGGCTGGCAAGCAACCGGGGTATGCTCATTCGGTTCGCGAGTACCATTCTATGATCTCCATCCTTGGCAAAATGAGGAAGTTTGATACTGCTTGGAACTTGATTGAGGAAATGAGAGGAGGTAGAAATGGTCTATCTCTTGTCACTCCGCAAACACTGTTGATTATGATAAGGAAATACTGTGCTGTACATGATGTTGCAAGGGCTATCAATACCTTCTATGCTTATAAACGGTTTAACTTTCGAGTTGGGCTAGAGGAATTTCATAGCCTTCTTTCTGCCCTTTGTCGGTATAAGAATGTGCAAGATGCTGAGTACTTACTGTTCTGCAACAAAGATGTATTCCCGTTAGACACCAAAAGCTTTAACATCATTCTGAATGGATGGTGTAATTTGATTGTTAGCACTAGTCATGCAGAAAGAATATGGCATGAGATGATAAAGAGAAGAATCCAACACGATGTTGTCTCCTATGGAAGTATCATATCTTGCTATTCAAAATCTTCTAAACTTTACAAGGTGCTCAGGATGTTTGATGAGATGAAGAAAAGGAAGATTACTCCAGATAGGAAGGTTTATAATGCTGTCATTTATGCCCTAGCAAAGGGCAGGCTTGTGAAAGAAGCTGTCAATCTCATTGGAACAATGGAAGGCAATGATGTTACTCCAGATGTTGTGACTTACAACTCCCTGATCAAGCCTCTTTGCAAAGCCCACAAAGTTGATGAAGCTAAACAACTTTTTGATGAGATGTTGAAACGGCACCTCTCCCCAACAATTCAAACTTTTCATGCTTTCTTCCGTATATTGCGGACCAAGGAAGAAGTATTTGAGCTCTTGGACAAAATGAAAGAGCTGCGGTGCTACCCAACCATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGTGCCAGCTTGATGATGTATTTAAGATATGGGATGCAATGAGGGAAGATGAAATAAGCCATGATCGTAGTTCATATATAGTGCTGATTCATGGGCTGTTTCTAAACGGAAAGCTAGAGGAAGCACAAAGATATTATGCAGAGATGCAAGAGAAAGGCTTCCTACCTGAACCGAAGACAGAAGAAATGCTTCAAGCATGGGTTTCCGGGAAACAGGCTACAGAGGGTCAGGAGAAAGATTTAGAACCAAGTCAACTGGAAAATGATACTCTTAAAAAGAAAGTAAAGGGCATACCGATAAATCCTTATTTGATAAGAGGTGGATGGCATACTCTTTTCTTGGTTTATAGCCAGACTTCAACTTCCTTTATCGTAAGCAAGAGCTGCAAGatatcaagcaaggaaagttag 1758 0.3868 MGATFNFFDPFKSETFLAPQKFGFSVKPFSTSSSTRSLGASTDAPAHGALGDDDDDGDGDGDEDDDDHDNNKDKNDTHCSQLHLRDDGLAKDVKTILAIMHEVGSGPSQIKQKLEHCSIVLSPELVVEVLSRTRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEEMRGGRNGLSLVTPQTLLIMIRKYCAVHDVARAINTFYAYKRFNFRVGLEEFHSLLSALCRYKNVQDAEYLLFCNKDVFPLDTKSFNIILNGWCNLIVSTSHAERIWHEMIKRRIQHDVVSYGSIISCYSKSSKLYKVLRMFDEMKKRKITPDRKVYNAVIYALAKGRLVKEAVNLIGTMEGNDVTPDVVTYNSLIKPLCKAHKVDEAKQLFDEMLKRHLSPTIQTFHAFFRILRTKEEVFELLDKMKELRCYPTIETYIMLIRKFCRWCQLDDVFKIWDAMREDEISHDRSSYIVLIHGLFLNGKLEEAQRYYAEMQEKGFLPEPKTEEMLQAWVSGKQATEGQEKDLEPSQLENDTLKKKVKGIPINPYLIRGGWHTLFLVYSQTSTSFIVSKSCKISSKES 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00393 585 Gene3D Tetratricopeptide repeat domain 97 253 IPR011990 GO:0005515
Gma16g00393 585 PANTHER OS01G0816000 PROTEIN 62 546 - -
Gma16g00393 585 Pfam Pentatricopeptide repeat domain 416 445 IPR002885 -
Gma16g00393 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Gma16g00393 585 MobiDBLite consensus disorder prediction 53 67 - -
Gma16g00393 585 Gene3D Tetratricopeptide repeat domain 279 383 IPR011990 GO:0005515
Gma16g00393 585 MobiDBLite consensus disorder prediction 29 79 - -
Gma16g00393 585 Pfam PPR repeat family 368 412 IPR002885 -
Gma16g00393 585 Pfam PPR repeat family 299 347 IPR002885 -
Gma16g00393 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Gma16g00393 585 TIGRFAM PPR: pentatricopeptide repeat domain 439 471 IPR002885 -
Gma16g00393 585 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Gma16g00393 585 TIGRFAM PPR: pentatricopeptide repeat domain 160 184 IPR002885 -
Gma16g00393 585 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Gma16g00393 585 TIGRFAM PPR: pentatricopeptide repeat domain 301 334 IPR002885 -
Gma16g00393 585 TIGRFAM PPR: pentatricopeptide repeat domain 474 505 IPR002885 -
Gma16g00393 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Gma16g00393 585 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 62 546 - -
Gma16g00393 585 Pfam PPR repeat 160 184 IPR002885 -
Gma16g00393 585 Pfam PPR repeat 474 503 IPR002885 -
Gma16g00393 585 Gene3D Tetratricopeptide repeat domain 384 579 IPR011990 GO:0005515
Gma16g00393 585 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00393 Gma-Chr16 4148044 4152626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00393 190 540 Glycosyltransferase AT1G05670 24.523 1.22e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00393 - - gmx:100785546 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01058 19 38514197 38515933 Gma16g00393 16 4148044 4152626 GST