Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g01042 ATGGGCGCGAGCAGCGACCCTACCCAAGACGGTTCCGACGAGCAGCAGAAGCGTTCGGAGATCTACACCTACGAGGCCCCCTGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAGAAGTACCGCCTGGCCATCGCTTCCCTCCTGGAGCAGTATCCGAACCGCGTGGAGATCGTCcagctcgacgactccaacggcgagatccgatccgatccctccctctccttcgagcatccctaccctcccaccaaatccatcttcatccccgacaaggactgccaccgccccgacctcctcgccacctcctccgacttcctcCGCGTCTGGCACATCTCCGAATCCTCCGTTGAACTCAAGTCCCTCCTCAACGGCAACAAGAACAGCGAGTACTGCGGCCCCCTCACCTCCTTCGACTGGAACGAAGCCGAGCCCAGAAGAATCGGCACCTCCAGCATCGACACCACCTGCACCATCTGGGACATTGAGAAGGAAACCGTAGACACGCAACTCATTGCGCACGATAAAGAGGTCTACGACATCGCCTGGGGCGGCGTCGGAGTCTTCGCCTCCGTCTCCGCCGACGGCTCCGTTAGGGTTTTCGATCTCCGCGACAAGGAGCACTCCACTATAATCTACGAGAGCTCGGAGCCTGACACGCCTCTGGTGCGTCTCGGGTGGAACAAGCAGGACCCGAGGTACATGGCAACGATCATCATGGACAGTGCGAAGGTGGTGGTGTTGGACATTCGCTTCCCCACGCTCCCTGTGGTGGAGCTGCAGCGGCACCAGGCGAGCGTGAACGCGGTTGCGTGGGCCCCGCATAGCTCGTGCCATATATGCACCGCCGGGGATGATTCGCAGGCGCTGATTTGGGACCTTTCTTCCATGGGTCAACCCGTGGAGGGCGGGCTTGACCCGATTCTTGCGTACACTGCGGGTGCGGAGATTGAGCAGCTTCAGTGGTCGTCTTCGCAGCCTGATTGGGTCGCTATTGCTTTCTCCACCAAGCTTCAGATTCTTAGGatccattgtggctga 1044 0.5105 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPSLSFEHPYPPTKSIFIPDKDCHRPDLLATSSDFLRVWHISESSVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRIHCG 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g01042 347 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Gma19g01042 347 PANTHER WD REPEAT CONTAINING PROTEIN 13 344 IPR045159 -
Gma19g01042 347 SUPERFAMILY WD40 repeat-like 48 302 IPR036322 GO:0005515
Gma19g01042 347 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 297 IPR001680 GO:0005515
Gma19g01042 347 Gene3D - 13 345 IPR015943 GO:0005515
Gma19g01042 347 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515
Gma19g01042 347 Pfam WD domain, G-beta repeat 261 294 IPR001680 GO:0005515
Gma19g01042 347 SMART WD40_4 165 203 IPR001680 GO:0005515
Gma19g01042 347 SMART WD40_4 117 162 IPR001680 GO:0005515
Gma19g01042 347 SMART WD40_4 254 294 IPR001680 GO:0005515
Gma19g01042 347 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g01042 Gma-Chr19 38187695 38189554 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g01042 K11805 - gmx:100779365 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01042 19 38187695 38189554 Gma16g00405 16 4304211 4306795 GST