Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00405 ATGGGCGCGAGCAGCGACCCCACCCAAGACGGTTCCGACGAGCAGCAGAAGCGTTCGGAGATCTACACCTACGAGGCCCCCTGGCACATCTACGCCATGAACTGGAGCGTCCGCCGCGACAAGAAGTATCGCCTCGCCATCGCCTCCCTCTTAGAGCAGTACCCTAACCGCGTGGAGATTGTCcagctcgacgactccaacggcgagatccgttccgacccctccctctccttcgagcacccttaccctcccaccaaggccatcttcatccccgacaaggactgccaCCGCCCCGATCTCCTCGCCACCTCCTCTGACTTCCTCCGCGTCTGGCACATCTCCGAATCCGCCGTCGAACTCAAGTCCCTCCTCAACGGCAACAAGAACAGCGAGTACTGTGGGCCCCTCACCTCCTTCGACTGGAACGAGGCCGAGCCCAGACGCATAGGCACCTCCAGCATCGATACCACCTGCACTATCTGGGATATCGAGAAGGAAACCGTCGATACTCAACTAATCGCTCATGATAAAGAGGTTTATGATATCGCATGGGGTGGCGTCGGAGTCTTCGCCTCCGTCTCCGCTGACGGTTCCGTTAGGGTTTTCGATCTCCGCGACAAGGAACACTCCACCATCATCTACGAGAGCTCGGAGCCGGACACGCCTCTGGTGCGGCTCGGGTGGAACAAGCAGGACCCACGCTACATGGCGACGATAATCATGGACAGTGCAAAGGTGGTGGTGTTGGATATTCGTTTTCCCACGCTCCCTGTGGTGGAGCTGCAGCGACACCAGGCGAGTGTGAACGCGATTGCGTGGGCCCCACATAGCTCGTGCCATATATGCACGGCCGGGGATGATTCGCAGGCGCTGATTTGGGACCTTTCTTCCATGGGTCAACCCGTGGAGGGTGGGCTTGACCCTATTCTTGCGTACACTGCCGGAGCGGAGATTGAGCAGCTTCAGTGGTCGTCTTCGCAGCCTGATTGGGTCGCTATTGCTTTCTCCACCAAGCTTCAGATTCTTAGGTGGGAAAAAATTGGAGTTAATAAAACCTCTGTTGGATTTGGGCACTCAATCGGTGGTCACAGGAAGATTTCCCTGGAAATGTCTTCTCTTTGA 1122 0.5152 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPSLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRVWHISESAVELKSLLNGNKNSEYCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRWEKIGVNKTSVGFGHSIGGHRKISLEMSSL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00405 373 SMART WD40_4 71 112 IPR001680 GO:0005515
Gma16g00405 373 SMART WD40_4 117 162 IPR001680 GO:0005515
Gma16g00405 373 SMART WD40_4 254 294 IPR001680 GO:0005515
Gma16g00405 373 SMART WD40_4 165 203 IPR001680 GO:0005515
Gma16g00405 373 ProSitePatterns Trp-Asp (WD) repeats signature. 281 295 IPR019775 -
Gma16g00405 373 Pfam WD domain, G-beta repeat 261 294 IPR001680 GO:0005515
Gma16g00405 373 Pfam WD domain, G-beta repeat 172 203 IPR001680 GO:0005515
Gma16g00405 373 Gene3D - 13 347 IPR015943 GO:0005515
Gma16g00405 373 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 297 IPR001680 GO:0005515
Gma16g00405 373 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 297 - -
Gma16g00405 373 PANTHER WD REPEAT CONTAINING PROTEIN 13 343 IPR045159 -
Gma16g00405 373 SUPERFAMILY WD40 repeat-like 48 303 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00405 Gma-Chr16 4304211 4306795 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00405 K11805 - gmx:100818850 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma19g01042 19 38187695 38189554 Gma16g00405 16 4304211 4306795 GST