Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00872 ATGTCTATGAACAACAACAACCCTTCCAATCCCTATGGACCCTCTTCCACCGCCAACCCACATTCCCAAATTACCCCTGGCCAGGGCCAGTATCCCCGGTCCCAGGCCCACGCCATCAtccaagcccagttccaggcccagctccaagcccaCGGGCTCACCCTCAACCCCAACGCCAAGCGTTTCCCTCCAAAACCCCCTATTCACACCGCCACCACGCCGTTTAAACAAACGGAACCCGCTCCCACCGTACCGGCTCGAAGGAAGAAGCATAAACCAAACGAGAAACATCTTCCTGAGAAAGCCTTAGCAATTCTCCCAGAATCGGAGATTTACACGCAGCTTCTCGACATAGAAGCGCGTGTGGACGCTGCACTCGTGAGAAAGAAGGTTGACATACAGGAGGCACTGAAAAACCCACCCTGCATTCAGAAAACGCTGAGAATCTTCGTGTTCAACACGTTCGCGAACCAGAGCAGCGCGGATTCCTCGGCTCCCACGTGGACTCTTAAGATAGTTGGGAGGATTTTGGAAGATGGTGAGGACCCTGAACAGGCAGGGGATGTTGCTGCCCAGAGGATGATGCCCCCTTTGTATCCAAAATTCTCCGCGTTTTTTAAACGAGTAACGATTTATCTTGACAAGAGGCTGTATCCAGATAACAATGTCATCTCTTGGGAGAATTCGCGGTCCTCGGCCGCTCACGAAGGTTTTGAGGTGAAGAGGAAGGGTGACAGGGAGTTCCCGGCGCAGATTCGGTTGGAGATGAATTACATGCTGGAGAAGTTTATGCTGTCCCCCGCGTTGAGAGAAGTGCTTGGTGTTCAGGTTGACACGCGGGCGAGGATTGTTTCCGCAATCTGGCATTATGTGAAGGCGAGGAAATTGCAGATCCCGAATGATCCTTCGTTCTTTCACTGCGATCAGGCTCTGCAGAGGGTGTTTGGGGAGGATAAGGTGAAGTTCACGATGGTTTCACAGAAGATTTCGCAGCATTTGTTTCCTCCACAGGTTATACTTTTGGAGCATATGATCAAGCTCTCCGGGAATAGTCCGGTTGGGTCTGCTTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATTCAGAGGGAATTGAATGCTCTGGTGGCCAATGTGGAGAGGACCAAAGAGATCGATGCATGTGATGAGTCCATATGTGGAATCATTAGAAAAATACACGAGCACCGAAGGAGGCGAGCATTCTTTGTTGGTTTTAGTCAGTCTCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAAACAAGGATCTGAAAGTTTTACTTGGAGAATCTCGTCACAATGCTGAAAAGGACCGCAAGTCAGATTTCTTTAAGCAACCCTGGGTTGAGGATGCTATTGTGCGCTATTTGAATCGCAAACCAGCTGCAGGAAGCGATGCTCCAGGGAGCACATAA 1437 0.485 MSMNNNNPSNPYGPSSTANPHSQITPGQGQYPRSQAHAIIQAQFQAQLQAHGLTLNPNAKRFPPKPPIHTATTPFKQTEPAPTVPARRKKHKPNEKHLPEKALAILPESEIYTQLLDIEARVDAALVRKKVDIQEALKNPPCIQKTLRIFVFNTFANQSSADSSAPTWTLKIVGRILEDGEDPEQAGDVAAQRMMPPLYPKFSAFFKRVTIYLDKRLYPDNNVISWENSRSSAAHEGFEVKRKGDREFPAQIRLEMNYMLEKFMLSPALREVLGVQVDTRARIVSAIWHYVKARKLQIPNDPSFFHCDQALQRVFGEDKVKFTMVSQKISQHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPIQRELNALVANVERTKEIDACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFIKALVESQNKDLKVLLGESRHNAEKDRKSDFFKQPWVEDAIVRYLNRKPAAGSDAPGST 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00872 478 SUPERFAMILY SWIB/MDM2 domain 253 343 IPR036885 -
Gma19g00872 478 MobiDBLite consensus disorder prediction 55 95 - -
Gma19g00872 478 Pfam SWIB/MDM2 domain 262 333 IPR003121 -
Gma19g00872 478 ProSiteProfiles SWIB/MDM2 domain profile. 258 335 IPR003121 -
Gma19g00872 478 Gene3D SWIB/MDM2 domain 255 338 IPR036885 -
Gma19g00872 478 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 53 475 - -
Gma19g00872 478 MobiDBLite consensus disorder prediction 1 33 - -
Gma19g00872 478 SMART swib_2 259 338 IPR019835 -
Gma19g00872 478 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 53 475 - -
Gma19g00872 478 CDD SWIB_like 265 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00872 Gma-Chr19 34586299 34588716 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma19g00872 SWIB 9.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00872 K11650 - gmx:100785069 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00742 05 10471537 10474003 Gma19g00872 19 34586299 34588716 GST
Gma16g00511 16 5669000 5670268 Gma19g00872 19 34586299 34588716 PCT
Gma19g00872 19 34586299 34588716 Gma16g00511 16 5669000 5670268 PCT