Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00511 ATGTCTATGAACAACAACAACAACAACAGCAACCCCCATGGACCCTCTTCCTCCGGGCCAGTACCCTCTTTCCCAGGCCCACGGGCTCACACTCAACCCGAACGCCAAACGTTTCCCTCCAAAACCCCCAATTCACACCTCCAAACGGAACCCGCTCCCACCGCCACCGCCGCCGCCGCAACCGCTCGAAGGAAGAAGCATAAACCAAATGAGAGACAGCTTCAACAATGCGGATTCTTCCGCTCCCACAATGGGAGGGGCTGTTGCTGCCCAGAGGATGCCCCCTTTGTGTCCGAAATTCTGTGTTTTTTAAACGATTATACGGATAATAATGTCATCACGTGGGAGAATTCGCAGTCCTCGGTGGCTCATGAAGGTTTTGAGGTTGATACGCGGTCAAGGATTGTTTCCGCCATCTGGTATTATGTGAAGGCGAGGAAGTCGCAAAACCTGAATGATCCTTCATTCTTTCAATGTGATCAGGCCCTGCAGAGGGTGTTTGGGGAGGATAAGGTGAAGTTCACGATGGTTTTGCAGAAGATTTCGCAGCATTTGTTTCCTTCTCAGGTTATACTTTTGGAGCATATGATCAAGCTCTCGGGGAATAGTCCGGTTGGGTCTGCTTGTTATGATGTGATGGTGGATATTCCTTTTCCTATTCAGAGGGAATTGAATGCTTTGGTGCCCAATATTGAAAGGACCAAAGAGATTGATGTGTGCGATGAGTCCATATGCGGAATCATTAGAAAAATACATGAGCACCACAGGAGGCGAGCGTTCTTGGTTGGTTTTAGTCAATCTTCTCTGGAATTTATTAAGGCATTGGTCGAATCTCAAAACAAGGATCTGAAAGTTTTACTTGGAGAATCTGGTCAAAATGCTGAAAAGGACCGCAAATCAGATTTTTTAAGCAACCATGGTAAGCTTAGGGGCTATCTATTGCATACCATTGTCCTCTGTTGTTTTATTTCTAGCTTGTCTCCTATGCACACTGCTTTTATTAGTTGA 1008 0.4643 MSMNNNNNNSNPHGPSSSGPVPSFPGPRAHTQPERQTFPSKTPNSHLQTEPAPTATAAAATARRKKHKPNERQLQQCGFFRSHNGRGCCCPEDAPFVSEILCFLNDYTDNNVITWENSQSSVAHEGFEVDTRSRIVSAIWYYVKARKSQNLNDPSFFQCDQALQRVFGEDKVKFTMVLQKISQHLFPSQVILLEHMIKLSGNSPVGSACYDVMVDIPFPIQRELNALVPNIERTKEIDVCDESICGIIRKIHEHHRRRAFLVGFSQSSLEFIKALVESQNKDLKVLLGESGQNAEKDRKSDFLSNHGKLRGYLLHTIVLCCFISSLSPMHTAFIS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00511 335 PANTHER SWI/SNF COMPLEX COMPONENT SNF12 HOMOLOG ISOFORM X1 128 303 - -
Gma16g00511 335 SUPERFAMILY SWIB/MDM2 domain 126 194 IPR036885 -
Gma16g00511 335 Pfam SWIB/MDM2 domain 128 185 IPR003121 -
Gma16g00511 335 CDD SWIB_like 126 185 - -
Gma16g00511 335 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 128 303 - -
Gma16g00511 335 Gene3D SWIB/MDM2 domain 120 190 IPR036885 -
Gma16g00511 335 MobiDBLite consensus disorder prediction 1 17 - -
Gma16g00511 335 MobiDBLite consensus disorder prediction 33 55 - -
Gma16g00511 335 MobiDBLite consensus disorder prediction 1 71 - -
Gma16g00511 335 ProSiteProfiles SWIB/MDM2 domain profile. 108 187 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00511 Gma-Chr16 5669000 5670268 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Gma16g00511 SWIB 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00511 K11650 - gmx:100785069 332.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00511 16 5669000 5670268 Gma05g00742 05 10471537 10474003 PCT
Gma16g00511 16 5669000 5670268 Gma19g00872 19 34586299 34588716 PCT
Gma05g00742 05 10471537 10474003 Gma16g00511 16 5669000 5670268 PCT
Gma19g00872 19 34586299 34588716 Gma16g00511 16 5669000 5670268 PCT