Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma19g00842 ATGGACAAGATGAAAATGGAGTTGGATGCGATCAAGAGTGAATTATCCCAAATTCATACGCAACAGTCAGCTCCCCCAAGACCGTCTAACCCTGACGTATTTGTTGCACGTGTTAGCACGAAAGAGAGTTGTGCTGAAGTTGCTAATAATGTTGTTGGTAACGAGCGGTCTACATTTGATACATGTAGTATGGGCTTCTACATTGTTTGTGGTGACAGTACACAGCTGGTGGCAGGGGGAAAGGATTCTGACCTTAATGTGCGGAAGCCAGTTGAACATAGTAGTGATGCAAAGCTTGCAGGTGAATTCGATCCATTGGGAGAGTTGATGAAGATATTGTTTTATGTGTACCAGAATCCAGTGGAAGTGTCGTGGGAGGCGAACCAATTTGGACTTCCTGAGATTGGGGCAAAATtttacatcacacatgcagatctagcagaaataatatcagGGTTATATATTATGGACAAGCTAAGCCAATATGAACGTCTGTTCAACCAATTTGATGAGAATGGAGATGGCAAGATATCGGCGTCGGAGCTCTGGCAATGTGTGGAGGCCATGGGCGGGGAGTTGTCGGAGAAGGACGCGGAGGCGGCAGTGGCATTGATGGACTCGGACGGCGATGGGCTGGTGGGGTTTGATGATTTTCTGAGGTTTGTGGAGGGAGGGAAAGAGGAAGAGAAAGAGGATGGCTTGAAGGAGGCTTTTAAGATGTATGAGATGGATGGGAGTGGTTGCATCACACCGAGGAGTCTTAAAAGGATGCTTAGTAGGTTAGGTGAATCTAGGAGCATAGATGAGTGTAAAGTTATGATAGCTAGATTTGATCTTGATGGAGATGGGGTGCTTACTTTCGATGAATTTAAGGTCATGATGTTGTAA 888 0.4381 MDKMKMELDAIKSELSQIHTQQSAPPRPSNPDVFVARVSTKESCAEVANNVVGNERSTFDTCSMGFYIVCGDSTQLVAGGKDSDLNVRKPVEHSSDAKLAGEFDPLGELMKILFYVYQNPVEVSWEANQFGLPEIGAKFYITHADLAEIISGLYIMDKLSQYERLFNQFDENGDGKISASELWQCVEAMGGELSEKDAEAAVALMDSDGDGLVGFDDFLRFVEGGKEEEKEDGLKEAFKMYEMDGSGCITPRSLKRMLSRLGESRSIDECKVMIARFDLDGDGVLTFDEFKVMML 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma19g00842 295 SMART efh_1 233 261 IPR002048 GO:0005509
Gma19g00842 295 SMART efh_1 269 295 IPR002048 GO:0005509
Gma19g00842 295 SMART efh_1 197 225 IPR002048 GO:0005509
Gma19g00842 295 SMART efh_1 161 189 IPR002048 GO:0005509
Gma19g00842 295 Gene3D - 146 223 - -
Gma19g00842 295 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 157 295 - -
Gma19g00842 295 Coils Coil 1 21 - -
Gma19g00842 295 CDD EFh 234 294 IPR002048 GO:0005509
Gma19g00842 295 ProSiteProfiles EF-hand calcium-binding domain profile. 193 228 IPR002048 GO:0005509
Gma19g00842 295 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Gma19g00842 295 CDD EFh 161 222 IPR002048 GO:0005509
Gma19g00842 295 ProSiteProfiles EF-hand calcium-binding domain profile. 157 192 IPR002048 GO:0005509
Gma19g00842 295 ProSitePatterns EF-hand calcium-binding domain. 170 182 IPR018247 -
Gma19g00842 295 ProSitePatterns EF-hand calcium-binding domain. 278 290 IPR018247 -
Gma19g00842 295 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 157 295 - -
Gma19g00842 295 Gene3D - 224 295 - -
Gma19g00842 295 ProSiteProfiles EF-hand calcium-binding domain profile. 229 264 IPR002048 GO:0005509
Gma19g00842 295 ProSiteProfiles EF-hand calcium-binding domain profile. 265 295 IPR002048 GO:0005509
Gma19g00842 295 SUPERFAMILY EF-hand 159 295 IPR011992 -
Gma19g00842 295 Pfam EF-hand domain pair 233 294 IPR002048 GO:0005509
Gma19g00842 295 Pfam EF-hand domain pair 162 222 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma19g00842 Gma-Chr19 33696338 33704252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma19g00842 157 294 EF-hand Containing Proteins AT1G76650 50.725 1.14e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma19g00842 K13448 - gmx:100784553 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00530 16 5864712 5872372 Gma19g00842 19 33696338 33704252 PCT
Gma19g00842 19 33696338 33704252 Gma16g00530 16 5864712 5872372 PCT