Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g00530 atgactaagttcaggaggcctgctctagagattgaaggccttgtggtggcgagtggactaagtcctttgatcgcctattccttagatacgggcgatcgaggactaacagaggtgaccatcaccttggacgatgtcgcgtcgttgctacatctgcctgttgtaggggcgttctatagctttgaactacttcatgtcgacgacactgtcgatatgttggcggaattactggaggttagcgctgcagagagtgggggttatgcttggggcgctgctgcacttgtacacatggatgataatttaaatgacgcgtctaagagtacggtgagtgttggatctacgagcattttccgtccattggtttcgttgttcctaccgaggattacgatgagaggagaccgcgtgcatgtcgatgaacgtttggcaaggcattgcctgttttcacgtattggagAAATCAGGTTATATATTATGGACAAGCTAAGCCAGTATAAACGTGTGTTCAACCAATTTGATGAGAATGGAGACAGCAAGATATCGCCGTCAGAGCTCCGGCAATGCGTGGAGGCCATTGGCGGGGAGTTGTCAGAGAAGGACGCGGAGGTGGCAGTGACATTGCTCGACAGGGACGGCGATGGACTGGTGGGGTTTGAAGATTTTGTGAGGTTTTTGGAGGAAGGGAAAGAGGAAGAGAAAGAGGATGACTTGAAGGAGGCTTTTAAGAGGTATGAGATGGATGGGAGTGGTTGCATCACACCCAGGAGTCTTAAGAGGATGCTTAGTAGGTTAGGTGAATCTAGAAGCTTAGATGAGTGTAAAGTTATGATTGCTAGATTTGATCTTGATGGAGATGGGGTGCTCACTTTCGATGAATTTAAGGTCATGATGTTGTAA 891 0.2256 MTKFRRPALEIEGLVVASGLSPLIAYSLDTGDRGLTEVTITLDDVASLLHLPVVGAFYSFELLHVDDTVDMLAELLEVSAAESGGYAWGAAALVHMDDNLNDASKSTVSVGSTSIFRPLVSLFLPRITMRGDRVHVDERLARHCLFSRIGEIRLYIMDKLSQYKRVFNQFDENGDSKISPSELRQCVEAIGGELSEKDAEVAVTLLDRDGDGLVGFEDFVRFLEEGKEEEKEDDLKEAFKRYEMDGSGCITPRSLKRMLSRLGESRSLDECKVMIARFDLDGDGVLTFDEFKVMML 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g00530 296 Gene3D - 144 228 - -
Gma16g00530 296 Gene3D - 229 296 - -
Gma16g00530 296 Pfam EF-hand domain pair 162 223 IPR002048 GO:0005509
Gma16g00530 296 ProSiteProfiles EF-hand calcium-binding domain profile. 194 229 IPR002048 GO:0005509
Gma16g00530 296 CDD EFh 162 223 IPR002048 GO:0005509
Gma16g00530 296 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 158 296 - -
Gma16g00530 296 ProSitePatterns EF-hand calcium-binding domain. 279 291 IPR018247 -
Gma16g00530 296 ProSiteProfiles EF-hand calcium-binding domain profile. 158 193 IPR002048 GO:0005509
Gma16g00530 296 CDD EFh 238 295 IPR002048 GO:0005509
Gma16g00530 296 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 158 296 - -
Gma16g00530 296 SMART efh_1 234 262 IPR002048 GO:0005509
Gma16g00530 296 SMART efh_1 270 296 IPR002048 GO:0005509
Gma16g00530 296 SMART efh_1 162 190 IPR002048 GO:0005509
Gma16g00530 296 SMART efh_1 198 226 IPR002048 GO:0005509
Gma16g00530 296 Pfam EF-hand domain pair 247 295 IPR002048 GO:0005509
Gma16g00530 296 ProSiteProfiles EF-hand calcium-binding domain profile. 266 296 IPR002048 GO:0005509
Gma16g00530 296 ProSiteProfiles EF-hand calcium-binding domain profile. 230 265 IPR002048 GO:0005509
Gma16g00530 296 ProSitePatterns EF-hand calcium-binding domain. 207 219 IPR018247 -
Gma16g00530 296 SUPERFAMILY EF-hand 160 296 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g00530 Gma-Chr16 5864712 5872372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g00530 158 295 EF-hand Containing Proteins AT1G76650 50.725 1.72e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g00530 K13448 - gmx:100783575 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g00530 16 5864712 5872372 Gma19g00842 19 33696338 33704252 PCT
Gma19g00842 19 33696338 33704252 Gma16g00530 16 5864712 5872372 PCT