Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g02316 ATGAAACAGGCGTTTGAGATGTTGGAGGAGATGGTTGGGAGAGGGTGGAAGCCGAATGTGTACACTCATACGGCTTTGATTGATGGTCTGTGTAAGAAAAGGTGGACCGACAAGGCGTTTAGATTGTTTCTTATGCTTGTTCGAAGCGAGAATCATAAGCCAAATGTGCTTATGTATACTGCCATGATTAGTGGGTATTGCAGGGATGAGAAAATGAACCGTGCTGAAATGCTGCTGAGCCGGATGAAGGAGCAGGGATTAGTGCCAAACACGAACACATACACGACTCTCGTTGATGGGCACTGCAAAGCGGGGAATTTTGAAAGGGTGTATGAGTTGATGAATGAGGAAGGTTCTAGTCCCAATGTTTGTACCTATAATGCTATTGTCGACGGCCTTTGTAATAAGAGGCTTACAAGGATGAGTGACCATGGTTGTGCTCCGGATTCTATTACTTATGGTGCTCTTATAAGTGGGCTGTGCAAACAGTCAAAATTGGATGAGGCTGGTCGGTTGCATGATGCCATGATAGAAAAGGGACTTACTCCATGTGAAGTTACTCAAGTAACTTTGGCTTATGAATATTGCAAGATAGATGATGGTTGCCCTGCTATGGTTGTTCTTGAAAGGCTGGAAAAGAAACTCTGGGTCTGGACAGTTAATATTAATACCCTGGTCAGGAAGCTATGTAGTGAGAGGAAAGTAGGTATGGCAGCGCTGTTCTTTCATAAGTTACTAGACATGGACCCTAATGTCAATCATGTAACAATAGCGGCATTTATGACTGGATGCTATGAAAGCTAA 804 0.4353 MKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKRWTDKAFRLFLMLVRSENHKPNVLMYTAMISGYCRDEKMNRAEMLLSRMKEQGLVPNTNTYTTLVDGHCKAGNFERVYELMNEEGSSPNVCTYNAIVDGLCNKRLTRMSDHGCAPDSITYGALISGLCKQSKLDEAGRLHDAMIEKGLTPCEVTQVTLAYEYCKIDDGCPAMVVLERLEKKLWVWTVNINTLVRKLCSERKVGMAALFFHKLLDMDPNVNHVTIAAFMTGCYES 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g02316 267 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 149 183 IPR002885 -
Gma18g02316 267 Gene3D Tetratricopeptide repeat domain 113 267 IPR011990 GO:0005515
Gma18g02316 267 Gene3D Tetratricopeptide repeat domain 1 112 IPR011990 GO:0005515
Gma18g02316 267 Pfam PPR repeat 118 136 IPR002885 -
Gma18g02316 267 Pfam PPR repeat 145 176 IPR002885 -
Gma18g02316 267 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 137 - -
Gma18g02316 267 PANTHER OS11G0607100 PROTEIN 138 264 - -
Gma18g02316 267 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 138 264 - -
Gma18g02316 267 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 19 54 IPR002885 -
Gma18g02316 267 PANTHER OS11G0607100 PROTEIN 1 137 - -
Gma18g02316 267 TIGRFAM PPR: pentatricopeptide repeat domain 58 91 IPR002885 -
Gma18g02316 267 TIGRFAM PPR: pentatricopeptide repeat domain 93 116 IPR002885 -
Gma18g02316 267 TIGRFAM PPR: pentatricopeptide repeat domain 151 183 IPR002885 -
Gma18g02316 267 TIGRFAM PPR: pentatricopeptide repeat domain 21 56 IPR002885 -
Gma18g02316 267 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 55 89 IPR002885 -
Gma18g02316 267 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 90 120 IPR002885 -
Gma18g02316 267 Pfam PPR repeat family 1 32 IPR002885 -
Gma18g02316 267 Pfam PPR repeat family 54 103 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g02316 Gma-Chr18 56991846 56992969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g02316 2 259 Miscellaneous Gene Families AT4G11690 30.519 6.51e-40 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g02316 - - gmx:100798435 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g02316 18 56991846 56992969 Gma09g02220 09 47728280 47731455 GST