Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g01997 ATGGAGAGATTTGGAGTACGCATTATTTCTTTGATTCTTCTTTTGATGCTTACTAAAAATTTAAGTTCCAATGCACTTGGTGACAGTATGAAGGATGAGGAAGGACTCAAAGAAGACCAAAATGAAATGGAAAATTCTCTCTCTAATTATGATGAAATGAGGGGCATGAAAGATGATGATTGGCAGATGGTGCAAAAGAAGGGAAACCATTTTGTGGTGAATGACAAGCCTTTCTATGTCAATGGATTCAACACATATTGGCTTATGGTATTTGCTGCAGATGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAACAAGCATCCTCAGTTGGTATGACAGTTTGTAGGACTTGGGCATTCAATGATGGGCAGTGGAGGGCCCTACAGAAATCCCCATCAGTTTATGATGAAGAAGTTTTCAAGGCTTTGGACTTTGTGGTAAGTGAAGCAAAGAAATACAAAATCAGGCTTATCTTATCATTGGCCAACAACTGGGAGGCATATGGAGGCAAAGCACAATATGTGAAATGGGGCAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAGCTACTACAAGGCCCATGTTAAGGCAAGTTCCTTTAAATTAATGCAACAGACTGTGCTCAATAGAGTTAACACATTCACAAACATCACTTATAAGGAAGATCCAACAATTTTCGCTTGGGAGTTGATGAATGAGCCTCGTTGCACCTCAGATCCCACGGGTGACAAGTTACAGGATTGGATACAAGAAATGGCATTCCATGTGAAGAAAATTGATCCAAAGCACCTAGTGGAGGTTGGAGTAGAAGGATTTTATGGCCCATCAACACCTCAGAGAACTCAGTTCAATCCCAACACATATGCTACACAGGTTGGAACTGATTTTATCAGAAACCACCTGGTTCTTGGAGTGGACTTCGCTTCTGTTCACATATATGCTGACTCTTGGATTTCACAACAAATTGCTGATACACATATCCCATTTATAAAATCATGGATGGAAGCCCACATAGAGGATGCTGAAAAGTATCTTGGAATGCCAGTTGTTTTTGCTGAGTTTGGTGTATCTTCCAAAGACCCTGGCTACAATTCATCATATAGAGACACAGTTATAAGCACTGTGTACAGTACCATCCTAAACTCCACAAAGAAAGGGGGGAGTGGGGCTGGAAGCCTTTTGTGGCAATTTTTTCCTGATGGAACCGATAACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCCCCTTCCACCTCAGGCATTATACAACTTCAATCCACTAGGCTTGCACTGTTTAATTCCTTGTGCAACACTAAATGCAATTGGGGTTGTAAGAAGAAGAAATTGTTGGAGGAAATACTCTATCGTGACGAACTGTGA 1416 0.4117 MERFGVRIISLILLLMLTKNLSSNALGDSMKDEEGLKEDQNEMENSLSNYDEMRGMKDDDWQMVQKKGNHFVVNDKPFYVNGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLILSLANNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHVKASSFKLMQQTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDPTGDKLQDWIQEMAFHVKKIDPKHLVEVGVEGFYGPSTPQRTQFNPNTYATQVGTDFIRNHLVLGVDFASVHIYADSWISQQIADTHIPFIKSWMEAHIEDAEKYLGMPVVFAEFGVSSKDPGYNSSYRDTVISTVYSTILNSTKKGGSGAGSLLWQFFPDGTDNMDDGYAIVLSKSPSTSGIIQLQSTRLALFNSLCNTKCNWGCKKKKLLEEILYRDEL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g01997 471 Coils Coil 468 471 - -
Gma18g01997 471 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE 8 471 - -
Gma18g01997 471 Gene3D Glycosidases 61 444 - -
Gma18g01997 471 Pfam Cellulase (glycosyl hydrolase family 5) 74 385 IPR001547 GO:0004553|GO:0071704
Gma18g01997 471 PANTHER - 8 471 IPR045053 GO:0004553
Gma18g01997 471 SUPERFAMILY (Trans)glycosidases 64 430 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g01997 Gma-Chr18 53260030 53262606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma18g01997 2 471 Glycoside Hydrolase AT5G01930 64.693 0.0 647
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g01997 K19355 - gmx:100811794 942.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g01997 18 53260030 53262606 Gma18g01997 18 53260030 53262606 ECH
Gma18g01997 18 53260030 53262606 Gma03g00023 03 301537 305083 PCT
Gma03g00023 03 301537 305083 Gma18g01997 18 53260030 53262606 PCT