Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma18g00912 ATGGCTGCTTCAATACCATTCACAGGTCTCAACTCCTCAAGGGTGCTTCCCATTCCCAAAGAGCCATACCACCCATTTTCCCATTTCCCCTCAAGCATGCCAAAGTTTGCATCTTTGAGAATCCCTTCTTCTTCTGTGTCTTGCTCTCTCACAAGAGACTCTTCCTCTGTTGTGCCATTGGAGGAACATGACAAAATGGGTAATGGGTCGGTTCTGCTTCAGAGACCCGATTCGTTTGGGAGGTTTGGCAAGTTTGGAGGGAAGTATGTCCCTGAGACTCTGATGCATGCTCTCTCTCAGCTTGAGGCTGCCTTTTATTCCCTCGCTGCTGATGAAGAGTTTCAGACAGAACTGGCTGGGATTCTAAAAGATTATGTTGGCCGGGAGAGTCCTCTTTATTTTGCTGAAAGGTTGACGGAGCATTACAAGAGGCCTAATGGTGAAGGACCTCACATTTATCTGAAGAGGGAAGATCTCAATCACACTGGGGCTCACAAAATTAATAATGCTGTTGCTCAAGCTTTGCTTGCTAAGAGATTGGGCAAAAAACGCATTATTGCTGAAACTGGAGCGGGTCAGCATGGAGTTGCCACTGCTACTGTATGTGCTCGATTTGGTTTAGAATGCATTATTTATATGGGTGCGCAGGATATGGAAAGGCAGGCTCTCAATGTTTTCAGAATGCGTCTTCTCGGTGCTGAGGTGAGACCAGTCCATTCTGGGACTGCTACACTTAAGGATGCGACATCAGAGGCTATAAGGGACTGGGTGACTAATGTGGAGACAACTCATTATATTTTGGGGTCTGTTGCTGGGCCGCATCCATATCCAATGATGGTAAGAGAGTTTCATGCTGTGATTGGCAAGGAGACCAGAAAGCAAGCTTTGGAGAAGTGGGGAGGGAAACCAGATGTCTTGATTGCATGTGTTGGTGGAGGTTCAAATGCCATAGGACTTTTCAATGAATTTGTTGATGACAAAGATGTAAGGCTAATTGGTGTGGAGGCTGCTGGATTTGGCCTGGACAGCGGCAAGCATGCTGCAACCTTAACAAAAGGAGAAGTTGGGGTTTTGCATGGAGCTATGAGCTATCTGCTGCAGGATGATGATGGACAAATAGTTGAGCCTCACTCTATTAGTGCAGGGTACTTGGACTACCCTGGTGTGGGTCCGGAACATAGCTTTTTGAAAGATTTAGGGCGTGCTGAATATCATAGTATCACAGATGAAGAAGCATTGGAAGCTTTTAAGAGAGTTTCGCGACTTGAAGGCATAATTCCTGCACTGGAAACATCTCATGCATTGGCATATCTAGAGAAAGTGTGTCCAACCCTTGCTAATGGAGCCAAGGTTGTGGTTAACTTCAGTGGCCGGGGTGATAAGGATGTTCAAACTGCTATCAAGTACTTGAAGCTTTGA 1419 0.4602 MAASIPFTGLNSSRVLPIPKEPYHPFSHFPSSMPKFASLRIPSSSVSCSLTRDSSSVVPLEEHDKMGNGSVLLQRPDSFGRFGKFGGKYVPETLMHALSQLEAAFYSLAADEEFQTELAGILKDYVGRESPLYFAERLTEHYKRPNGEGPHIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLIACVGGGSNAIGLFNEFVDDKDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIVEPHSISAGYLDYPGVGPEHSFLKDLGRAEYHSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKVCPTLANGAKVVVNFSGRGDKDVQTAIKYLKL 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma18g00912 472 Gene3D - 82 284 IPR036052 -
Gma18g00912 472 Gene3D - 127 463 IPR036052 -
Gma18g00912 472 CDD Trp-synth_B 97 465 IPR006654 GO:0004834|GO:0006568
Gma18g00912 472 PANTHER TRYPTOPHAN SYNTHASE-RELATED 22 471 - -
Gma18g00912 472 ProSitePatterns Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 159 173 IPR006653 GO:0004834|GO:0006568
Gma18g00912 472 Pfam Pyridoxal-phosphate dependent enzyme 126 457 IPR001926 -
Gma18g00912 472 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 76 470 IPR036052 -
Gma18g00912 472 TIGRFAM trpB: tryptophan synthase, beta subunit 80 469 IPR006654 GO:0004834|GO:0006568
Gma18g00912 472 PANTHER TRYPTOPHAN SYNTHASE BETA CHAIN 1, CHLOROPLASTIC-RELATED 22 471 - -
Gma18g00912 472 Hamap Tryptophan synthase beta chain [trpB]. 75 470 IPR023026 GO:0000162|GO:0004834
Gma18g00912 472 PIRSF Trp_syn_beta 69 472 IPR023026 GO:0000162|GO:0004834
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma18g00912 Gma-Chr18 10756662 10760737 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma18g00912 K01696 - gmx:100801288 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma18g00912 18 10756662 10760737 Gma18g00912 18 10756662 10760737 ECH
Gma18g00912 18 10756662 10760737 Gma08g02934 08 45770767 45775222 GST